Gene detail information of Glyur000120s00006116 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10770.1 | 1.00E-50 | oligopeptide transporter 7 |
| NR | XP_003628537.1 | 1.92E-71 | Oligopeptide transporter [Medicago truncatula] |
| Swissprot | tr|O82485|OPT7_ARATH | 3.00E-58 | Oligopeptide transporter 7 |
| trEMBL | tr|G7LDQ5|G7LDQ5_MEDTR | 7.00E-72 | Oligopeptide transporter OPT family protein {ECO:0000313|EMBL:AET03013.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00120 | 321858 | 322454 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000120s00006116.1 | PF03169.10 | OPT | 46 | 145 | 7.80E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.425 |
| SRR1783600 | control | 2.461 |
| SRR1783602 | moderate drought stress | 5.381 |
| SRR1811619 | moderate drought stress | 4.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.135 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.989 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.781 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.272 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.395 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.484 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.857 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.492 |
| SRR2868004 | Drought Stress (root) | 1.701 |
| SRR2967015 | Control (root) | 3.829 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.365 |
| SRR9715740 | Leaf | 0.652 |
| SRR9715741 | Leaf | 1.492 |
| SRR9715739 | Root | 0.819 |
| SRR9715742 | Root | 1.720 |
| SRR9715743 | Root | 1.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.099 |
| SRR8749028 | MeJA induced 9h | 1.639 |
| SRR8749029 | MeJA induced 9h | 0.825 |
| SRR8749030 | Uninduced | 0.748 |
| SRR8749031 | Uninduced | 0.321 |
| SRR8749032 | Uninduced | 0.821 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.944 |
| SRR8400027 | Control - Root | 1.750 |