Gene detail

Gene detail information of Glyur000120s00006104

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G17820.1	0	histidine kinase 1
NR	XP_006599324.1	0	PREDICTED: histidine kinase 1-like [Glycine max]
COG	YP_001528977.1	3.00E-53	multi-sensor hybrid histidine kinase [Desulfococcus oleovorans Hxd3]
Swissprot	tr\|Q9SXL4\|AHK1_ARATH	0	Histidine kinase 1
trEMBL	tr\|K7MGY5\|K7MGY5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G23420.2}

Sequence

Transcript Sequence

>Glyur000120s00006104.1
ATGCCAATCGTAAAATTGGGCCAACCCAAGGGGACACAACACAACACACAAATACATACACAAGGTGTGAATTACAAGTGCCAGAAAACAGAAGGCCAAACCTCTTGTGCTTCTTCTGAAAGTTCTGTTATTACTGTATGTTCAGCAGGTTCAAGCTCCCCTATGGGTACCAAGTGCATACACGTTTTTGACAGATTAAAGGGTTATGCCACTTCATGGAAGAGAGGTAGCACACCAACTGGTAGAAGAATTTTCCACAGGGATGTGGAAAAAGAAGAATTCCAGTATGCCAGTACTCAATGTCTCTCATCATACTATAGTGTCTTTGTGGTTCGCCTAGCAATCATGGTTATGCTAGCTATCTTGATTGGTCTACTCACTTTCCTGACATGGCATTTCACAAAGATTTATACAACAAAGTCTCTTAATAGCTTGGCTTATGACCTGCGTTATGAGCTTCTGCAACGCCCCATCTTGAGGATGTGGAACATTCTCAATTCTACNGCTGAAATCACAACCTCTCAGGTCAAGCTGTCTGAGTATGTGATCAGAAAACACAGCGACATAGCCACTCAAGCGCAGCAAGTTGAGATGTACGAAGCAATGAGGGCTGTAACATGGGCACTGTTTGCTAGTAGAAAAGCTCTCAACTCAATAACTGTCAAGTATAGGAACGGTTTTGTCCAGGCATTTCATAGAGACTTGAAGGGTAATAATACGTTTTACATTTACTCAGATCTTGCAAATTACTCCATAGTTGCCAGTGGCCATAATGAGATCAATTCATTTGAGACACATGAAGCTTGGAATGAGAAAGACAATCATGGTAACAAGTCTGCGATTTGGTACCGCGAACCTCTTGACCCTATCAGTGGTGAGAAGATTGGAAAAGCAATGGAAATTGCCCCAGAAGACTCAATCAATATAGCTGGCCTGTCCCAAGTACCTGATGGTGTGGCCTCATGGCATGTTTCTGTGAGCAAGTTCACAGATTCACCATTGCTTTCTGCAGCATTGCCAGTTTGGGATTCTTCTAATAAGAGCATTGTGGCAGTGGTGGGTGTCACAACTGCTCTCTATAGTGTGGGGCAGCTAATGAAAGAGCTAGTTGAGATGCACAGTGGTCATATGTATTTGACCTCCCAAGAGGGCTATTTGCTTGCAACTTCCACAAGTGACCCTCTATTGACAAATTCAACAAAGCCGCCTAAGCTTAAGATGGCTGTTGACTGTGATAATGAAGTAATAAGAGAGGGAGCTCAGTGGCTGCAGAAAACCTATGGGAACAATTTCCCTCCAAATCATGAGGTTCATGCAGAGAATGCCAGGCTAGGTCACCAGCAATATTACATTGACTCATTCTTCCTAAACTTGAAGAGACTTCCTCTGGTGGGTGTAATCATCATACCGAGAAAGCATATCATGGGGCAGGCAGATGAAAGAGCCTTCAAAACCTTGGTTATTCTGATATCTGCATCTTTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGAGTATCAAAGGAAATGAGACTAAGAGCAGAACTAATCAGTCACCTGGAAGCAAGAAGGAAGGCTGAGGCATCAAGCAACTATAAAAGCCAATTTCTTGCTAATATGAGTCATGAACTGAGGACACCAATGGCAGCAGTTATTGGGTTACTTGACATTCTTATATCCGATGACTGCCTCACAAATGAACAATGTGCAACGGTTACTCAAATAAGAAAATGCTCAACTGCTCTGCTCCGTTTACTCAATAATATCTTGGATCTGAGCAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGAATTGGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTGCAGTGCATTAACCACAGTGTAGAGATTGTTTTAGATCTGTCTGATGATATGCCAAAGCTAGTTCGGGGAGATTCTGCTAGGGTAGTTCAAATTTTCGCAAATTTGATCAACAACTCAATTAAGTTTACTTTATCGGGTCACATTGTTCTGAGAGGATGGTGTGAAAACCCAAATTCTCACAGTGATAGTGCAAATTGTCCTCTCGAGCAGAAGAAATTGGGGTTCTCACAAAAGACCAGAACGAAGCAACACGAAAACCATGGAAAGAAGACTTCTAATAGTGATAACAAAATGACACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCAAATAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACCACCAGACTGCATGGAGGCACTGGTCTTGGTCTTTGTATTGTCAGATCCTTGGTTAATAAGATGGGTGGAGACATCAAGGTTGTCAAAAAGGAAGGACCAGGAACACTGATGCGATTATACCTGCGTCTCAGCGCACCCGCGGATGCCACAGAACAACACTGTCAAGTAGATTTTGCTAACAATGGCTTAGTGGTACTTCTTGCACTACATGGCAACATGAGTAGATTAATTACATCCAAGTGGTTACAGAAAAATGGGGTGGTCACTATGGAGGCATCTGAATGGAATGGATTAACACAAATTCTGAGACAACTCTTTCATGCAAGAAGTTCATCCCATAATAATAATGGCTTTGATGCACATTATCCAGCACATGATCAGGGTTTGAGGTCTAAATTGCTGAGCATACAGGAATTGACAAACCCAACATTTGTCATTGCTGTTGATATTGGACTACTTGACCTGAGCACAGATATTTGGAAGGAACAGCTTAACTTCCTCCACAAGTACTATGGGAGAGCAAAATTTGTATGGGCACTAAACCATGACTCCTCCAATTCCATAAAGATGGAGCTTTGCAAGAAAGGACATATACTGACAGTCAACAAACCCCTTTACAAAACTAAGATGATTCACATTTTGGAAGATGTCATAAAGGAGAGAAATGTTGAGCTGCAAAAGAAAAACGTGAAAGAGGGTGATTTGCATGACAGTGTTGAGATTGATTATACTCTTTGTGATGTTGCAAGCTCAGATGGTTCTGACATATCTGAAATGGGTGGTTCTAATCATGTTAGTGCCAATAATAATGGAGATAAACAAAGAGAAGAGTTAGTTAGATCCCAACAACCATCATCACAGTACCAGATAAATAACTGCTTGTTAGGATTAACTCATGAATATATGGAACATAATACTCCTAGGAAAGAAGGGTCATGTCAGAGCAGCCTCAATTCTAATGATGTCACTGCAAAAGGTGAAGAGGATTCTGAATGTGGTGAAACACGTAGGAGTAAAGCAGTGAATGGAAAGAAATCTCTTGAAGATGTGAGGATATTGCTTGCAGAAGATACGCCAGTGATTCAAAGGGTTGCAACCATAATGCTTGAAAAAATGGGAGCCACTGTTGTTGCCGTGGGTGATGGACAACAGGCAGTGGATGCTCTGAATGGAATGCTTGGTATGCCAAAGATGGATGGCTATGAAGCAACAAAAGAAATCAGGAAATCAGAAGTGGGAACAGGGTTCCACATTCCAATTGTTGCTCTGACAGCTCATGCAATGTCATGTGATGAAGCCAAATGCCTGGGGGTGGGCATGGATGCTTATTTAACAAAGCCAATTGACTTTAAACTCATGGAGTCTACCATTCTTTCACTCACCAGAAAGACACCCTGACTTCTACTAACGATATGGTGATGCTAACGAATTAAGGGTTGGGGCCTAGAATAGCCTACAAATGTATAGAAGTTTACCAAATATCAACATAAGGAAACACGGCTTTAACGCATGATTTCC

Protein Sequence

>Glyur000120s00006104.1
MPIVKLGQPKGTQHNTQIHTQGVNYKCQKTEGQTSCASSESSVITVCSAGSSSPMGTKCIHVFDRLKGYATSWKRGSTPTGRRIFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMVMLAILIGLLTFLTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTSQVKLSEYVIRKHSDIATQAQQVEMYEAMRAVTWALFASRKALNSITVKYRNGFVQAFHRDLKGNNTFYIYSDLANYSIVASGHNEINSFETHEAWNEKDNHGNKSAIWYREPLDPISGEKIGKAMEIAPEDSINIAGLSQVPDGVASWHVSVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVGQLMKELVEMHSGHMYLTSQEGYLLATSTSDPLLTNSTKPPKLKMAVDCDNEVIREGAQWLQKTYGNNFPPNHEVHAENARLGHQQYYIDSFFLNLKRLPLVGVIIIPRKHIMGQADERAFKTLVILISASLCIIVIGCVCILILTNGVSKEMRLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFELGRELEGLVDMFSVQCINHSVEIVLDLSDDMPKLVRGDSARVVQIFANLINNSIKFTLSGHIVLRGWCENPNSHSDSANCPLEQKKLGFSQKTRTKQHENHGKKTSNSDNKMTLWFEVDDTGCGIDPNKWDSVFESFEQADPSTTRLHGGTGLGLCIVRSLVNKMGGDIKVVKKEGPGTLMRLYLRLSAPADATEQHCQVDFANNGLVVLLALHGNMSRLITSKWLQKNGVVTMEASEWNGLTQILRQLFHARSSSHNNNGFDAHYPAHDQGLRSKLLSIQELTNPTFVIAVDIGLLDLSTDIWKEQLNFLHKYYGRAKFVWALNHDSSNSIKMELCKKGHILTVNKPLYKTKMIHILEDVIKERNVELQKKNVKEGDLHDSVEIDYTLCDVASSDGSDISEMGGSNHVSANNNGDKQREELVRSQQPSSQYQINNCLLGLTHEYMEHNTPRKEGSCQSSLNSNDVTAKGEEDSECGETRRSKAVNGKKSLEDVRILLAEDTPVIQRVATIMLEKMGATVVAVGDGQQAVDALNGMLGMPKMDGYEATKEIRKSEVGTGFHIPIVALTAHAMSCDEAKCLGVGMDAYLTKPIDFKLMESTILSLTRKTP

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00120	254638	261325	-

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000160 phosphorelay signal transduction system

GO:0007165 signal transduction

GO:0016310 phosphorylation

cellular_component
GO:0016020 membrane

molecular_function

GO:0000155 phosphorelay sensor kinase activity

GO:0004871 signal transducer activity

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000120s00006104.1	PF00512.20	HisKA	538	603	1.40E-15
Glyur000120s00006104.1	PF02518.21	HATPase_c	650	800	3.90E-27
Glyur000120s00006104.1	PF00072.19	Response_reg	1109	1210	1.00E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.380
SRR1783600	control	0.362
SRR1783602	moderate drought stress	1.007
SRR1811619	moderate drought stress	0.988

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.653
DRR006520	Root Summer glycyrrhizin high producing strain	0.662
DRR006521	Root Winter glycyrrhizin high producing strain	0.378
DRR006522	Root Winter glycyrrhizin high producing strain	0.366
DRR006523	Root Summer glycyrrhizin low producing strain	1.520
DRR006524	Root Summer glycyrrhizin low producing strain	1.469
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.303
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.358

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.620
SRR2868004	Drought Stress (root)	20.097
SRR2967015	Control (root)	18.481

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.049
SRR9715740	Leaf	10.118
SRR9715741	Leaf	8.149
SRR9715739	Root	0.192
SRR9715742	Root	0.700
SRR9715743	Root	0.468

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.154
SRR8749028	MeJA induced 9h	0.178
SRR8749029	MeJA induced 9h	0.120
SRR8749030	Uninduced	0.114
SRR8749031	Uninduced	0.219
SRR8749032	Uninduced	0.191

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.428
SRR8400027	Control - Root	4.586