Gene detail information of Glyur000120s00006101.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G66140.12.00E-113proteasome alpha subunit D2
NRXP_007156176.14.10E-175hypothetical protein PHAVU_003G264700g [Phaseolus vulgaris]
COGNP_126298.13.00E-61proteasome subunit alpha [Pyrococcus abyssi GE5]
Swissprottr|Q9SXU1|PSA7_CICAR3.00E-175Proteasome subunit alpha type-7
trEMBLtr|V7CFY6|V7CFY6_PHAVU2.00E-175Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00120247553250880-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K02731PSMA7EC:3.4.25.1Proteasomemap03050


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex

GO:0019773  proteasome core complex, alpha-subunit complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000120s00006101.1PF10584.4Proteasome_A_N4269.90E-15
Glyur000120s00006101.1PF00227.21Proteasome271991.10E-57


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control146.319
SRR1783600control146.826
SRR1783602moderate drought stress86.845
SRR1811619moderate drought stress86.359

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain114.735
DRR006520Root Summer glycyrrhizin high producing strain109.851
DRR006521Root Winter glycyrrhizin high producing strain79.394
DRR006522Root Winter glycyrrhizin high producing strain76.830
DRR006523Root Summer glycyrrhizin low producing strain64.420
DRR006524Root Summer glycyrrhizin low producing strain63.504
DRR006525Leaf Summer glycyrrhizin high producing strain50.712
DRR006526Leaf Summer glycyrrhizin high producing strain50.703

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)167.135
SRR2868004Drought Stress (root)137.492
SRR2967015Control (root)115.852

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf79.972
SRR9715740Leaf65.392
SRR9715741Leaf76.332
SRR9715739Root88.192
SRR9715742Root88.262
SRR9715743Root89.483

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h149.415
SRR8749028MeJA induced 9h73.244
SRR8749029MeJA induced 9h105.955
SRR8749030Uninduced41.334
SRR8749031Uninduced21.416
SRR8749032Uninduced27.027

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root132.103
SRR8400027Control - Root129.774

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved