Gene detail

Gene detail information of Glyur000120s00006098

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51280.1	1.00E-157	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	KHN04727.1	0	hypothetical protein glysoja_046660 [Glycine soja]
COG	YP_001277975.1	1.00E-23	cold-shock protein, DNA-binding [Roseiflexus sp. RS-1]
Swissprot	tr\|Q9SD20\|MS5L2_ARATH	0	Protein POLLENLESS 3-LIKE 2 {ECO:0000303\|Ref.5}
trEMBL	tr\|G7LB76\|G7LB76_MEDTR	0	TPR superfamily protein {ECO:0000313\|EMBL:AET03749.1}

Sequence

Transcript Sequence

>Glyur000120s00006098.1
ATGTTGCAAGACATGTGGAATGCTCCCCCAGGATTCAGACCTTCCAAGTCAGCACCTTCTTCTCCTGCAAAGCCTCCTGGTGTTCCCAGAACTCGCTCTGAATCCTTCCACGTCACCCACAAGGTCCCTGTTGGTGATACTCCTTATGTCAGAGCCAAAAACGTTCAGTTGGTAGATAAGGACCCGGAGAGAGCAATTCCACTGTTTTGGGCAGCCATTAATGCGGGAGATAGAGTGGACAGTGCTTTGAAAGACATGGCTATTGTGATGAAGCAGCAGAACCGGGCTGAAGAAGCCATTGAAGCTATTAAATCACTTCGAAGTAGATGCTCAGATCAAGCACAAGAATCCCTTGATAATATCCTCTTGGATCTTTATAAGAGGTGTGGGAGACTTGATGACCAAATTGCTCTATTGAGGCACAAGCTCTACTTAATTCAACAAGGGTTGGCTTTCAATGGCAAGCGCACAAAGACTGCTAGATCTCAAGGGAAGAAGTTTCAGGTCTCTGTGGAGCAAGAAGCCACTAGATTACTGGGGAACTTGGGATGGGCACTGATGCAGCAGAACAACTACATTGAAGCAGAAGAAGCCTATCGCCATGCACTTACAATAGCTCCAGATAACAACAAGATGTGCAACTTGGGCATTTGCTTGATGAAGCAAGGGAGGATTGGTGAGGCAAAAGAGACCCTTTATAGGGTAAAGCCTGCGATTACCGATGGCCCAAGAGGCTCGGATTCTCATCTGAAAGCCTATGAAAGGGCACAGCAAATGCTCAAAGACCTTGAATCTGAGATGATGAGTAAAGGAGGAGGGGATAGGATTGAACAAAGCAGGCTCTTTGAAGCTTTTCTGGGTTCCTCATCAATCTGGCAACCTCAGCCTTGTAAGGATCACCACACAAGCAGCATGCCAGCAATGAGTTCAGCCAGAGCCCAAGCCCAAGATGAATTTGGGGATGAGAACATCAATTCCAACATAATCACCGCCACAAATCACAAAGCAGCAGCACCACAGTATAATAATAAAGGTAGCAAACAGGTTGTTCCCATGTTGGTGAACAACAACCCACTTAATGTTGCAGCCCCACCATTCTATGCAGCAAAGTCTTTCAAGGATTCTGTGTTGAGAGAACCAAATGAGAACCAGATCTCTGAGACCCTTAAGAGAACAAGGTCTGGAAATGCTGCCAACAATAAGATGATGACGATGCATCATGTGGATTTAGGGGTGCCCGGGAACAAAACAAGGAGGCTCTCATCAGAGGCCAATGAGAAGAACAAGTTGACAGAAGACTTGTTACCTGATAATAAGGACTTTGAAGATGCTATTCTTGCTGCAATTCTGGGGCCAGCTAATGAGTCAGATAATAAAGTCAATGACACCACTGAGATTTTCCAGAGGAAAATTGACAAGAGGCTTAAGGTTTTTCAAGATATTACATTATCTTTGAGTCCAAATGCCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00120	241456	243237	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000120s00006098.1	PF00515.23	TPR_1	178	209	1.60E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.393
SRR1783600	control	3.206
SRR1783602	moderate drought stress	2.491
SRR1811619	moderate drought stress	2.521

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.036
DRR006520	Root Summer glycyrrhizin high producing strain	5.190
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.686
DRR006524	Root Summer glycyrrhizin low producing strain	1.567
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.169
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.340

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.711
SRR2868004	Drought Stress (root)	8.259
SRR2967015	Control (root)	13.373

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.671
SRR9715740	Leaf	0.250
SRR9715741	Leaf	1.065
SRR9715739	Root	2.364
SRR9715742	Root	1.193
SRR9715743	Root	1.600

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.270
SRR8749028	MeJA induced 9h	20.216
SRR8749029	MeJA induced 9h	15.362
SRR8749030	Uninduced	0.100
SRR8749031	Uninduced	0.217
SRR8749032	Uninduced	0.723

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.790
SRR8400027	Control - Root	9.350