Gene detail information of Glyur000120s00006097 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66130.1 | 9.00E-153 | RADIATION SENSITIVE 17 |
| NR | XP_004509381.1 | 0 | PREDICTED: cell cycle checkpoint protein RAD17-like [Cicer arietinum] |
| COG | YP_003541577.1 | 3.00E-13 | replication factor C large subunit [Methanohalophilus mahii DSM 5219] |
| Swissprot | tr|Q9MBA3|RAD17_ARATH | 0 | Cell cycle checkpoint protein RAD17 |
| trEMBL | tr|G7LB75|G7LB75_MEDTR | 0 | Cell cycle checkpoint protein RAD17, putative {ECO:0000313|EMBL:AET03748.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00120 | 235096 | 240191 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000120s00006097.1 | PF03215.10 | Rad17 | 89 | 486 | 2.50E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.546 |
| SRR1783600 | control | 1.577 |
| SRR1783602 | moderate drought stress | 1.443 |
| SRR1811619 | moderate drought stress | 1.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.975 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.821 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.663 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.325 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.812 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.984 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.063 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.027 |
| SRR2868004 | Drought Stress (root) | 7.087 |
| SRR2967015 | Control (root) | 6.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.751 |
| SRR9715740 | Leaf | 3.164 |
| SRR9715741 | Leaf | 2.014 |
| SRR9715739 | Root | 1.268 |
| SRR9715742 | Root | 1.886 |
| SRR9715743 | Root | 1.947 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.926 |
| SRR8749028 | MeJA induced 9h | 5.518 |
| SRR8749029 | MeJA induced 9h | 4.379 |
| SRR8749030 | Uninduced | 1.451 |
| SRR8749031 | Uninduced | 0.686 |
| SRR8749032 | Uninduced | 0.657 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.584 |
| SRR8400027 | Control - Root | 6.578 |