Gene detail information of Glyur000120s00006094 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G35930.1 | 5.00E-71 | F-box family protein |
| NR | XP_004509385.1 | 3.53E-147 | PREDICTED: F-box protein At4g35930-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q5XF11|FB248_ARATH | 2.00E-91 | F-box protein At4g35930 |
| trEMBL | tr|V7CH17|V7CH17_PHAVU | 6.00E-143 | Uncharacterized protein {ECO:0000313|EMBL:ESW28181.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00120 | 212677 | 215533 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.696 |
| SRR1783600 | control | 11.769 |
| SRR1783602 | moderate drought stress | 7.966 |
| SRR1811619 | moderate drought stress | 7.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.410 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.292 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.094 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.096 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.829 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.970 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.118 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.060 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.546 |
| SRR2868004 | Drought Stress (root) | 10.116 |
| SRR2967015 | Control (root) | 13.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.755 |
| SRR9715740 | Leaf | 1.384 |
| SRR9715741 | Leaf | 1.708 |
| SRR9715739 | Root | 11.931 |
| SRR9715742 | Root | 7.580 |
| SRR9715743 | Root | 6.869 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.416 |
| SRR8749028 | MeJA induced 9h | 9.756 |
| SRR8749029 | MeJA induced 9h | 11.670 |
| SRR8749030 | Uninduced | 1.604 |
| SRR8749031 | Uninduced | 1.399 |
| SRR8749032 | Uninduced | 1.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.736 |
| SRR8400027 | Control - Root | 24.876 |