Gene detail

Gene detail information of Glyur000120s00006092

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35920.3	1.00E-163	PLAC8 family protein
NR	XP_004509394.1	0	PREDICTED: protein MID1-COMPLEMENTING ACTIVITY 1-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q8L7E9\|MCAC1_ARATH	0	Protein MID1-COMPLEMENTING ACTIVITY 1
trEMBL	tr\|G7LB65\|G7LB65_MEDTR	0	MID1-complementing activity-like protein {ECO:0000313\|EMBL:AET03738.1}

Sequence

Transcript Sequence

>Glyur000120s00006092.1
TGTCATTAGAGGCTTAAGATGCCAATGCTATTTGCATAACCAAAGGTAAGATAGCATGGCATCTTCATGGGAACATTTTGGGGAGATTGCAAATGTGGCCCAGTTAACGGGCATAGATGCTGTGAGGTTAATTGGGATGATTGTGAAAGCTGCAAACACAGCAAGGATGCACAAGAAGAATTGCAGGCAGTTTGCACAGCACCTGAAGCTGATTGGGAACTTGCTGGAGCAGCTGAAGGTCTCAGAGCTTAAGAAGTACCCCGAAACCCGGGAGCCTCTGGAGCAGCTAGAAGATGCCCTCAGAAGGTCTTACATTTTGGTCAATAGTTGTCAGGACNGCAGCTATCTCTATCTGCTGGCCATGGGCTGGAACATTGTTTATCAATTCAGGAAGGCTCAGAATGAAATTGACAGATACTTGCGCCTTGTTCCTCTCATTACTCTTGTCGACAATGCTCGAGTCAGGGAGAGACTCGAAGTTATTGAAAAGGATCAATGTGAGTACACATTGGATGATGAGGACCAAAAGGTGCAGACTGTTATTTTGAATCCCGAACCTGACAAAGATCACACCGTAGTGCTGAAGAAAACCCTTTCCTACTCTTACCCGAACTTTTCTTTCACTGAAGCACTTACAAAAGAAAATGAAAAGCTTCAACTAGAGCTACAACATTCACAAGCAAATATGGATATATATCAGTGTGAATTCATTCAACGCTTACTAGATGTCACAGAAGTTGCAAACTATTCTCTTCCTTCACCTGAAAAAAGTCACAAGACAATAGACTACAGTTATTCTGANGCCAATGGCAACAAAGGACATTCTTCTGATAAAAAATACCATAAAAAAAGTGACACTCTTTCGACATCAACATCGTCGGTTTCAGAAAAGAATATGCTGTCAACTGGAGGTCCATATCAGCAGGAACATTGGCATACTGATTTACTTGCTTGTTGTTCTGAACCTTATCTTTGTATAAAGACATTCTTCTATCCATGTGGGACATTTTCAAAGATTGCTACTGTTGCATCTAACAGGCCAATATCTTCTGCTGAAGCATGTAATGAATTTATGGCCTATTCATTAGTTTTATCTTGCTGTTGCTATACTTGCTGCATAAGGAGGAAGCTTCGGAAGATGCTGAACATCAAGGGAGGATTTGTTGATGATTTTCTTTCCCATTTGATGTGTTGCTGCTGTGCCCTTGTGCAAGAATGGAGAGAAGTGGAGATCCGCGGGGTTTATGGTTCTGAAAAGACCAACACAAGCCCTCCAACCTTACAGTACATGGAATCTTAAATAACAAATTAGGTTGTCATTTGATTGGTTAGGGCGTGAATACCATATTAAATTAGAGGCAATNGGATATTGGAACTGCCACCGGAAGCTCAGGGCCAATTTATTTTGATTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00120	205502	209217	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000120s00006092.1	PF04749.12	PLAC8	293	391	1.40E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.765
SRR1783600	control	2.786
SRR1783602	moderate drought stress	1.217
SRR1811619	moderate drought stress	1.280

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.542
DRR006520	Root Summer glycyrrhizin high producing strain	7.259
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.711
DRR006524	Root Summer glycyrrhizin low producing strain	1.802
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.060
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.095

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.889
SRR2868004	Drought Stress (root)	5.526
SRR2967015	Control (root)	6.143

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.240
SRR9715740	Leaf	0.773
SRR9715741	Leaf	0.404
SRR9715739	Root	0.540
SRR9715742	Root	2.287
SRR9715743	Root	2.251

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.143
SRR8749028	MeJA induced 9h	0.071
SRR8749029	MeJA induced 9h	0.215
SRR8749030	Uninduced	0.067
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.119

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.112
SRR8400027	Control - Root	18.624