Gene detail information of Glyur000120s00006083 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G17760.1 | 4.00E-137 | Eukaryotic aspartyl protease family protein |
| NR | AET03732.2 | 0 | eukaryotic aspartyl protease family protein [Medicago truncatula] |
| Swissprot | tr|Q9LX20|ASPL1_ARATH | 4.00E-75 | Aspartic proteinase-like protein 1 (Precursor) |
| trEMBL | tr|G7LB59|G7LB59_MEDTR | 0 | Eukaryotic aspartyl protease family protein {ECO:0000313|EMBL:AET03732.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00120 | 174762 | 178548 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000120s00006083.1 | PF14543.1 | TAXi_N | 115 | 290 | 1.10E-28 |
| Glyur000120s00006083.1 | PF14541.1 | TAXi_C | 312 | 451 | 2.00E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.559 |
| SRR1783600 | control | 3.772 |
| SRR1783602 | moderate drought stress | 6.286 |
| SRR1811619 | moderate drought stress | 6.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.147 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.139 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.049 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.937 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.911 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.623 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.737 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.594 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.062 |
| SRR2868004 | Drought Stress (root) | 10.253 |
| SRR2967015 | Control (root) | 13.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.670 |
| SRR9715740 | Leaf | 19.125 |
| SRR9715741 | Leaf | 27.424 |
| SRR9715739 | Root | 0.573 |
| SRR9715742 | Root | 3.167 |
| SRR9715743 | Root | 2.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.442 |
| SRR8749028 | MeJA induced 9h | 6.138 |
| SRR8749029 | MeJA induced 9h | 4.955 |
| SRR8749030 | Uninduced | 7.560 |
| SRR8749031 | Uninduced | 5.111 |
| SRR8749032 | Uninduced | 3.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.137 |
| SRR8400027 | Control - Root | 7.438 |