Gene detail information of Glyur000120s00006066 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G17695.3 | 1.00E-82 | |
| NR | AET03696.2 | 3.49E-136 | UPF0548 plant-like protein [Medicago truncatula] |
| COG | YP_004863164.1 | 2.00E-24 | hypothetical protein [Candidatus Chloracidobacterium thermophilum B] |
| Swissprot | tr|Q8GXB1|U548_ARATH | 6.00E-104 | UPF0548 protein At2g17695 |
| trEMBL | tr|G7LAA5|G7LAA5_MEDTR | 1.00E-136 | UPF0548 plant-like protein {ECO:0000313|EMBL:AET03696.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00120 | 107179 | 109144 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000120s00006066.1 | PF09348.5 | DUF1990 | 45 | 198 | 2.00E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.091 |
| SRR1783600 | control | 2.237 |
| SRR1783602 | moderate drought stress | 1.495 |
| SRR1811619 | moderate drought stress | 1.478 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.184 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.193 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.738 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.605 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.691 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.405 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.937 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.914 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.434 |
| SRR2868004 | Drought Stress (root) | 3.067 |
| SRR2967015 | Control (root) | 3.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.108 |
| SRR9715740 | Leaf | 5.658 |
| SRR9715741 | Leaf | 3.261 |
| SRR9715739 | Root | 1.149 |
| SRR9715742 | Root | 0.954 |
| SRR9715743 | Root | 1.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.840 |
| SRR8749028 | MeJA induced 9h | 2.255 |
| SRR8749029 | MeJA induced 9h | 3.568 |
| SRR8749030 | Uninduced | 1.113 |
| SRR8749031 | Uninduced | 0.214 |
| SRR8749032 | Uninduced | 0.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.896 |
| SRR8400027 | Control - Root | 4.918 |