Gene detail information of Glyur000120s00006057 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G35730.1 | 1.00E-90 | Regulator of Vps4 activity in the MVB pathway protein |
| NR | XP_004509413.1 | 0 | PREDICTED: IST1-like protein-like [Cicer arietinum] |
| trEMBL | tr|I1MMY9|I1MMY9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G22850.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00120 | 60049 | 62743 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000120s00006057.1 | PF03398.9 | Ist1 | 32 | 197 | 1.20E-61 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.186 |
| SRR1783600 | control | 3.985 |
| SRR1783602 | moderate drought stress | 4.091 |
| SRR1811619 | moderate drought stress | 4.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.064 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.606 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.497 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.526 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.797 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.785 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.669 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.776 |
| SRR2868004 | Drought Stress (root) | 6.474 |
| SRR2967015 | Control (root) | 10.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.951 |
| SRR9715740 | Leaf | 2.687 |
| SRR9715741 | Leaf | 1.252 |
| SRR9715739 | Root | 1.989 |
| SRR9715742 | Root | 2.848 |
| SRR9715743 | Root | 3.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 43.093 |
| SRR8749028 | MeJA induced 9h | 13.999 |
| SRR8749029 | MeJA induced 9h | 19.313 |
| SRR8749030 | Uninduced | 1.877 |
| SRR8749031 | Uninduced | 0.450 |
| SRR8749032 | Uninduced | 1.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.903 |
| SRR8400027 | Control - Root | 12.825 |