Gene detail

Gene detail information of Glyur000120s00006049

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51440.1	2.00E-102	Calcium-dependent phosphotriesterase superfamily protein
NR	XP_004509419.1	0	PREDICTED: adipocyte plasma membrane-associated protein-like [Cicer arietinum]
COG	YP_005883954.1	1.00E-65	strictosidine synthase family protein [Marinobacter adhaerens HP15]
Swissprot	tr\|Q9SD05\|SSL6_ARATH	2.00E-128	Protein STRICTOSIDINE SYNTHASE-LIKE 6 {ECO:0000303\|PubMed:10777701} (Precursor)
trEMBL	tr\|K7K6E4\|K7K6E4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G04810.2}

Sequence

Transcript Sequence

>Glyur000120s00006049.1
ATGTCCGAGTCAAGCGGTGTGGACTCTTCTTCTTCTTTGAGCACTGCCAAGAGAAGAACACAAACAAGGTCATGCCTTTTGACAACCTTATTTACCATTGCTGTCCCCGTAGCGGTGGCTGCGGTTATCTACCGGCTCGAGCCGTTCGAACCGGTTCACTTCCCGGCCGGCGAGTTAAGCCGGCGAACCGCGACGGCCCCGGCTCGCAACTCGCGCATGCGAGTAGGGTCAGAAGTCGTGGCGGCGGGACAGGTGGAGGGACCCGAAGACNTGGCTTATGATAAGAGGAGGCGTCTCATCTACACGGGCTGTGTGGACGGGTGGATCAAGCGAGTCACGGTCAAGGAATCGGTTGCTGACTCGGTGGTCGATAACTGGGTCAACACCGGTGGAAGACCGCTCGGACTCGCTCTGGAGCGAAACGGGGAACTCATAGTTGCGGACGCTTACTTGGGACTGCTGAGAGTGATGACAAGCGGGGGGAAGGAAAAGAAGGTAGAGGTGTTGGCGGAGGAGTTTGAGGGGTTGAAATTCAATTTAACAGATGGTGTTGACGTAGCTGAAGATGGTACCATTTATTTCACGGATGCATCATACAAATACTGTTTGAAGGATTTCTACTATGACATTGCGGAAGGGAAGCCTCATGGGAGATTCATGAGCTATAATCCAGCAACAAAAAAGGTATCCCTCCTTGCCCGCAACCTCTACTTCCCCAATGGAGTTGCTGTCTCACCAGATCAAAACTTCGTCATCTACTGTGAAACTATCCTGAGTAGATGCAGAAAATATTACATACAGGGTCCAAAAAAAGGAAGGATAGGTGAATTCTGTCCTGATCTACCTGGCATGCCGGATAATATTCATTATGTTGGGCAGGGACAGTACTTTATTGGAATGTCCACGTCCGTAACTCCTCAATGGGATTTAATGCGTAGATATCCTTTCATTCGGAAAGCTGCAGCAATGGTTGCAAAGTATGTAGGAAGACTAAAATTAGAGAAGAATGGAGGAGTTATAGTTGTGGATTTGGAAGGAAAACTAAGAGAGCACTACTATGATCCCGAATTATCATTGATTTCAAGTGGGATCAAAATTGAAAATTATATATATTGTGGCTCTCTTATGTATCCCTTTATAATACGTCTAGATATGAAGAAATATCCTGCACTTCCCTCAACATGAACAACAGGGAGAACATCTCAGCCAGACGAGCATCTATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00120	30763	33681	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function
GO:0016844 strictosidine synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000120s00006049.1	PF03088.11	Str_synth	182	269	2.00E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.166
SRR1783600	control	0.200
SRR1783602	moderate drought stress	1.226
SRR1811619	moderate drought stress	1.238

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.090
DRR006522	Root Winter glycyrrhizin high producing strain	0.088
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.150
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.383

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.009
SRR2868004	Drought Stress (root)	2.357
SRR2967015	Control (root)	3.500

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.595
SRR9715740	Leaf	13.480
SRR9715741	Leaf	17.748
SRR9715739	Root	1.344
SRR9715742	Root	0.469
SRR9715743	Root	0.873

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.930
SRR8749028	MeJA induced 9h	7.838
SRR8749029	MeJA induced 9h	4.891
SRR8749030	Uninduced	4.064
SRR8749031	Uninduced	2.299
SRR8749032	Uninduced	5.061

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.639
SRR8400027	Control - Root	3.263