Gene detail

Gene detail information of Glyur000120s00006047

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51430.2	4.00E-75	Calcium-dependent phosphotriesterase superfamily protein
NR	AET03659.2	4.72E-164	strictosidine synthase family protein [Medicago truncatula]
COG	YP_005883954.1	1.00E-46	strictosidine synthase family protein [Marinobacter adhaerens HP15]
Swissprot	tr\|Q9CAZ7\|SSL5_ARATH	8.00E-96	Protein STRICTOSIDINE SYNTHASE-LIKE 5 {ECO:0000303\|PubMed:10777701} (Precursor)
trEMBL	tr\|G7LA68\|G7LA68_MEDTR	2.00E-164	Strictosidine synthase family protein {ECO:0000313\|EMBL:AET03659.2}

Sequence

Transcript Sequence

>Glyur000120s00006047.1
GTACTATTTCGCCCCACTTAATTTATGTTTATTGACAACTCCATCTTAGGCGGCAACTCCCTCGAAACTAACGGCCACCACTACTAAAAACTAAAAACCTTACCAGATCAGATACCATCACCACCTATATCGATATGTCGGAGTCAAGTAACTCTAATTTTGAGAGCACAAACACGAGAACTCGAACAAGGTCATGGCTTTTCACCCCGTTCTTCGCTATCGTTCTCCCCGTGGTCGTGGCTACGGTTCTCTACCGGCTCGATCCGTTGGAACCGGTTCCAATCCCGGTCAACGAGATGAACCGGTCCCCGTTGGTGGCCCCCACGCGTAACGAGAATATGCGACGAGGAGCCGAAGCCGTGGCGGTGGGACACGTGGCGGGTCCCGAAGACTTGGTTTACGACGCCGCGAGTGGCGTCCTTTACACCGGCTGTGAGGATGGGTGGATCAAGCGAGTCACGTTGAATGAATTGGCGCCTGACTCGGTGGTTGAAAACTGGGTCAACACTGGTGGAAGACCGCTTGGGCTAGCTTTTCAACAGAATGGTGAACTCATAGTCGCCGACGCGGATAAGGGACTGCTGAGAGTAACAAGCGAAAAGGAGATTGAGGTGCTGGTGGATGAGGTTGAGGGCTTAAAATTCAAATTAACAGACGGTGTCGACGTAGCACATGATGGCACCATTTATTTCACGGATGCTTCATATAAATATTCCTATAAGGATTCCACTTTAGATCTGTTGGAAGGCAAACCNAATGGTAGATTTTTTAGCTATAATCCAGCAACAAAAAAGACAACCTTGTTAGCCCGCGACCTCTATTTTCCCAATGGAGTTGCCGTCTCACCAGATCAACATTTCGTGGCCTTTACCCCTGAACTGGATATAGCATTTAGATACCCTTTCATTAGGAAGGTTGTAGCNATCGTTACCAAGTATTTTCCGAGTCTACGTCCATCGAAGAATGGTGGAGTCATTGCCGTGGATTTGGAAGGAAAACCAACTGCACACTATTATGATCCCAAATTATCATTGACTAGTGGGATCAAGATTGGGAATCATATATATTGTGGTTCCATTAACTACCCCTTTGTAATAAGTCTTAACATTGGGGAGTATCCTGCTCTCCCCATAATTTGAACAAAAAAAAAATTCNCTTAAGATTGTGATGTAATAGCAAAGTTTTAGTTTCATCATACAGTCATGTAGGTGGCATAAATATGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00120	18372	21343	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function
GO:0016844 strictosidine synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000120s00006047.1	PF03088.11	Str_synth	174	246	3.80E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.053
SRR1783600	control	4.103
SRR1783602	moderate drought stress	2.020
SRR1811619	moderate drought stress	2.017

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.245
DRR006520	Root Summer glycyrrhizin high producing strain	0.305
DRR006521	Root Winter glycyrrhizin high producing strain	0.638
DRR006522	Root Winter glycyrrhizin high producing strain	0.555
DRR006523	Root Summer glycyrrhizin low producing strain	0.180
DRR006524	Root Summer glycyrrhizin low producing strain	0.174
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.690
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.480

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.930
SRR2868004	Drought Stress (root)	5.613
SRR2967015	Control (root)	3.814

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.185
SRR9715740	Leaf	20.156
SRR9715741	Leaf	17.076
SRR9715739	Root	6.012
SRR9715742	Root	5.124
SRR9715743	Root	5.413

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.556
SRR8749028	MeJA induced 9h	8.201
SRR8749029	MeJA induced 9h	7.851
SRR8749030	Uninduced	11.948
SRR8749031	Uninduced	4.296
SRR8749032	Uninduced	6.142

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.668
SRR8400027	Control - Root	9.686