Gene detail

Gene detail information of Glyur000119s00012199

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G39410.1	7.00E-176	Saccharopine dehydrogenase
NR	XP_003621322.1	0	hypothetical protein MTR_7g011890 [Medicago truncatula]
COG	YP_003837819.1	4.00E-48	Saccharopine dehydrogenase [Micromonospora aurantiaca ATCC 27029]
Swissprot	tr\|Q8LGI2\|SCPDL_ARATH	0	Probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410
trEMBL	tr\|G7L350\|G7L350_MEDTR	0	Saccharopine dehydrogenase-like protein {ECO:0000313\|EMBL:AES77540.1}

Sequence

Transcript Sequence

>Glyur000119s00012199.1
CTTCCAACCAAAATATAAATTAAATAATCGTGTTGGTTTGAGAGAGAACCACACTCACTCTTGTCTTCTCCAGTGTAACAAGGAGTGGAAGTGGAGCTCCAAATAATGGAAGCACAACATCGTTACGACATTGTAATCCTGGGTGCCTCAGGTTTCACAGGCAAATACGTCGTCAAAGAAGCACTCAAATTCCTCAACACCCCATCCTCGCCACTCAGATCCGTAGCACTGGCGGGCCGCAACCCTGCGAAACTGGCCCAAGCCCTTGANTGGGCCGCAAGGCCCAATCCTCCNCCTNCTCTCCCCATCCTCCCTGCCGACACCACCGACCCTTCATCACTGCGGGCCCTATGCTCCCAGGCCTGCATTATCCTCAACTGCGTGGGCCCATTCCGCCTCCACGGCGAGCCCGTCGTCGCCGCCTGCGCCGATTCCGGCTGCGACTACCTCGACATCTGCGGCGAACCCGAGTTCATGGAGCGCATGGAGCATGCCTACCACGACCNGGCCGCGGAAACCGGCTCGCTTGTGGTTTCGTCCTGTGGGTTCGATTCGGTGCCCGGCGAGTTCGGGCTCCTCTTCAATTCACGGCAGTGGGTGGGCCCGGAGGTGCCGAACCGGGTCGAGGCCTATGTGAGCTTGGAGTCCAAGAAGAGAATGGTGGTTAACTTTGCCACCTATGAATCTGCGGTTCTGGGCTGGGCCAATAAAGAGAAGTTGCAGGAGTTCAGAAGGTCTATACCCAGAAGAGCTAGGCCTCTGATTCCCGGGCCCCCTCCATCTAATGGAGAGACTATAGAACACCAGAAGAAAATTGGCCTCTGGGCATTAATCCTACCTACAGCAGATGCAAGTGTTGTTCGAAGAACACTTGCAGCTCTAACAGAAAACCCCCATGGTCTCCCTGGGTTGAATGAGAGCCCTGAGATGGTTGAGAAAAGAGAAGCCTTCTGGTCCTCTGTGAAGCCAGCTCATTTTGGGGTTAAAATAGGCTCAAAATCTTTGTTGGGCATTTTGAGATTCTATATGGTTGGAATTCTCATTGGTCGTTTAGGAGGTAATGGTTTTGGAAGGTGGCTCCTTTTGAATTTTCCTTCATTATTTAGCCTTGGTTGCTTCAGGGAGAATGGCCCTTCTGAAGAGGAGGTGGAAAGTGCTTTATTTAAGATGTGGTTTGTTGGACAGGGTTTTAGCAATAAGAGTCTTGCTTCACAGGGAAACACAAAACCTGACATGGAAATTATAACAAGAGTAATGGGACCTGAAATTGGATATGTAACCACCCCAATAATTCTTGTTCAGTGTGCTCTCGTTCTTCTTAGTCAGCGCAATAACCTGCCAAAAGGAGGAGTTTACCCTCCTGGGATTATATTTGGTCCAACTGATCTCCAGCAAAGACTTCAACAAAATGGAATATCCTTTGATGTCATCTCAAAAATCACTATTCCTTCTTCCTTGTGAAAATAAGTTTAAAACANCTTATGACCATCTTGCNGGATCTCGAACTAGCTTGGAACCAAGAGATTAGGAAGCTCATCTGCTATTCCGACTCCTTAACGGCAGTGGATCTTGTTGCTCAGCCACCATGCTATGCACACCTGTATGCGGCTCAGATCGAACTGGTCTTATTACTAAACTTGAACGCTCCCAATTTTTTAGGGACCATAAACATATTTTTTTCCCTTCTTTTTTAATTAACCAATCTAATATTAGTTGGTTAATGTCGTTGTCCATTGGAATTTGGAAACATGGAGCCTTCACCCAAGACTTTTTATTGGCATGGTGGATGGGATTTTCTTGGTGGCTAGCTTGCTAAACAACAAAGGCCACTAAGGAATGAGACCNCACATATAAAGAAGTAAAGCACAGACTTATCGCTGTTTTTGTTCTTAAGCAGCAAGGGAGGGGGAAAAAAACTTTAATAATGGTGGGAATAGGATCCACTAGAAGAATATTCATGTCCTCTAACTTGAGAGAAATAACGTTTAATACTTTAATCCCGTGTAAAATCTTTTGATAGATTCCATGTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00119	329474	333283	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000119s00012199.1	PF03435.13	Saccharop_dh	9	150	2.20E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.801
SRR1783600	control	4.032
SRR1783602	moderate drought stress	3.318
SRR1811619	moderate drought stress	3.301

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.912
DRR006520	Root Summer glycyrrhizin high producing strain	1.840
DRR006521	Root Winter glycyrrhizin high producing strain	0.273
DRR006522	Root Winter glycyrrhizin high producing strain	0.267
DRR006523	Root Summer glycyrrhizin low producing strain	0.943
DRR006524	Root Summer glycyrrhizin low producing strain	0.866
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.869
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.822

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.909
SRR2868004	Drought Stress (root)	6.880
SRR2967015	Control (root)	6.935

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.158
SRR9715740	Leaf	1.293
SRR9715741	Leaf	1.102
SRR9715739	Root	8.271
SRR9715742	Root	2.499
SRR9715743	Root	4.079

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.208
SRR8749028	MeJA induced 9h	0.132
SRR8749029	MeJA induced 9h	0.180
SRR8749030	Uninduced	0.125
SRR8749031	Uninduced	0.075
SRR8749032	Uninduced	0.056

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.599
SRR8400027	Control - Root	10.763