Gene detail information of Glyur000119s00012196 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G29240.2 | 3.00E-71 | Protein of unknown function (DUF179) |
| NR | KHM98812.1 | 0 | UPF0301 protein [Glycine soja] |
| COG | YP_003092166.1 | 1.00E-11 | hypothetical protein Phep_1896 [Pedobacter heparinus DSM 2366] |
| trEMBL | tr|V7B1W6|V7B1W6_PHAVU | 3.00E-178 | Uncharacterized protein {ECO:0000313|EMBL:ESW11555.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00119 | 319154 | 320714 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000119s00012196.1 | PF02622.10 | DUF179 | 135 | 302 | 7.20E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.334 |
| SRR1783600 | control | 12.578 |
| SRR1783602 | moderate drought stress | 10.971 |
| SRR1811619 | moderate drought stress | 10.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.712 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.612 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.458 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.740 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.062 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.972 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 36.944 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 37.156 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.048 |
| SRR2868004 | Drought Stress (root) | 50.829 |
| SRR2967015 | Control (root) | 49.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.815 |
| SRR9715740 | Leaf | 24.677 |
| SRR9715741 | Leaf | 21.439 |
| SRR9715739 | Root | 13.802 |
| SRR9715742 | Root | 7.238 |
| SRR9715743 | Root | 7.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.896 |
| SRR8749028 | MeJA induced 9h | 19.769 |
| SRR8749029 | MeJA induced 9h | 8.058 |
| SRR8749030 | Uninduced | 3.291 |
| SRR8749031 | Uninduced | 1.826 |
| SRR8749032 | Uninduced | 5.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.518 |
| SRR8400027 | Control - Root | 25.059 |