Gene detail information of Glyur000119s00012189 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G29180.2 | 1.00E-158 | Protein of unknown function (DUF1336) |
| NR | XP_003531834.1 | 0 | PREDICTED: uncharacterized protein LOC100807449 isoformX1 [Glycine max] |
| Swissprot | tr|F4JSE7|EDR2_ARATH | 2.00E-10 | Protein ENHANCED DISEASE RESISTANCE 2 |
| trEMBL | tr|K7L8J0|K7L8J0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G26200.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00119 | 282362 | 286390 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000119s00012189.1 | PF07059.7 | DUF1336 | 273 | 516 | 9.10E-78 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.379 |
| SRR1783600 | control | 18.255 |
| SRR1783602 | moderate drought stress | 15.854 |
| SRR1811619 | moderate drought stress | 15.846 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.525 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.249 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.334 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.352 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.612 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.326 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.355 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.985 |
| SRR2868004 | Drought Stress (root) | 4.198 |
| SRR2967015 | Control (root) | 3.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.191 |
| SRR9715740 | Leaf | 2.630 |
| SRR9715741 | Leaf | 2.808 |
| SRR9715739 | Root | 0.891 |
| SRR9715742 | Root | 4.683 |
| SRR9715743 | Root | 4.570 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.652 |
| SRR8749028 | MeJA induced 9h | 2.017 |
| SRR8749029 | MeJA induced 9h | 1.934 |
| SRR8749030 | Uninduced | 1.027 |
| SRR8749031 | Uninduced | 1.315 |
| SRR8749032 | Uninduced | 1.370 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.739 |
| SRR8400027 | Control - Root | 10.430 |