Gene detail information of Glyur000119s00012175 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26790.1 | 4.00E-166 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_006579638.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like [Glycine max] |
| Swissprot | tr|O81028|PP171_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g26790, mitochondrial (Precursor) |
| trEMBL | tr|K7KN57|K7KN57_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G04804.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00119 | 232128 | 234593 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000119s00012175.1 | PF01535.15 | PPR | 197 | 226 | 0.04 |
| Glyur000119s00012175.1 | PF13041.1 | PPR_2 | 233 | 277 | 3.20E-12 |
| Glyur000119s00012175.1 | PF13041.1 | PPR_2 | 300 | 347 | 1.20E-14 |
| Glyur000119s00012175.1 | PF12854.2 | PPR_1 | 400 | 430 | 8.90E-07 |
| Glyur000119s00012175.1 | PF13041.1 | PPR_2 | 443 | 486 | 2.50E-12 |
| Glyur000119s00012175.1 | PF12854.2 | PPR_1 | 505 | 535 | 3.50E-06 |
| Glyur000119s00012175.1 | PF01535.15 | PPR | 543 | 572 | 0.00055 |
| Glyur000119s00012175.1 | PF01535.15 | PPR | 613 | 642 | 0.093 |
| Glyur000119s00012175.1 | PF13041.1 | PPR_2 | 644 | 690 | 2.30E-17 |
| Glyur000119s00012175.1 | PF13041.1 | PPR_2 | 730 | 778 | 7.50E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.136 |
| SRR1783600 | control | 3.054 |
| SRR1783602 | moderate drought stress | 4.632 |
| SRR1811619 | moderate drought stress | 4.555 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.984 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.069 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.149 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.085 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.235 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.422 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.765 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.412 |
| SRR2868004 | Drought Stress (root) | 5.472 |
| SRR2967015 | Control (root) | 6.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.046 |
| SRR9715740 | Leaf | 4.048 |
| SRR9715741 | Leaf | 5.872 |
| SRR9715739 | Root | 0.859 |
| SRR9715742 | Root | 6.414 |
| SRR9715743 | Root | 5.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.583 |
| SRR8749028 | MeJA induced 9h | 4.099 |
| SRR8749029 | MeJA induced 9h | 1.720 |
| SRR8749030 | Uninduced | 1.704 |
| SRR8749031 | Uninduced | 3.048 |
| SRR8749032 | Uninduced | 1.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.391 |
| SRR8400027 | Control - Root | 7.834 |