Gene detail information of Glyur000119s00012171 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G26690.1 | 5.00E-65 | emp24/gp25L/p24 family/GOLD family protein |
| NR | XP_004491839.1 | 2.04E-106 | PREDICTED: transmembrane emp24 domain-containing protein p24delta9-like [Cicer arietinum] |
| Swissprot | tr|Q9LQY3|P24D9_ARATH | 6.00E-81 | Transmembrane emp24 domain-containing protein p24delta9 (Precursor) |
| trEMBL | tr|A2Q3Q9|A2Q3Q9_MEDTR | 3.00E-106 | Emp24/gp25L/p24 family protein {ECO:0000313|EMBL:AES77509.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00119 | 223070 | 225220 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000119s00012171.1 | PF01105.19 | EMP24_GP25L | 24 | 193 | 4.90E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.134 |
| SRR1783600 | control | 1.182 |
| SRR1783602 | moderate drought stress | 0.203 |
| SRR1811619 | moderate drought stress | 0.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.033 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.426 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.767 |
| SRR2868004 | Drought Stress (root) | 3.472 |
| SRR2967015 | Control (root) | 2.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.943 |
| SRR9715740 | Leaf | 3.812 |
| SRR9715741 | Leaf | 1.677 |
| SRR9715739 | Root | 0.499 |
| SRR9715742 | Root | 0.156 |
| SRR9715743 | Root | 0.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.173 |
| SRR8749030 | Uninduced | 0.062 |
| SRR8749031 | Uninduced | 0.110 |
| SRR8749032 | Uninduced | 0.182 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.004 |
| SRR8400027 | Control - Root | 4.871 |