Gene detail

Gene detail information of Glyur000119s00012163.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01120.1	0	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NR	AGA60137.1	0	cystathionine gamma-synthase [Lens culinaris]
COG	YP_003267806.1	6.00E-133	cystathionine gamma-synthase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|P55217\|CGS1_ARATH	0	Cystathionine gamma-synthase 1, chloroplastic {ECO:0000305} (Precursor)
trEMBL	tr\|L0EKR2\|L0EKR2_LENCU	0	Cystathionine gamma-synthase {ECO:0000313\|EMBL:AGA60137.1}

Sequence

Transcript Sequence

>Glyur000119s00012163.1
GGAAAAGAACAAACCGACGAAGGGAGCCACGCGTATTTCCAAGTTGCATCCAACTACTATATTTATAAGGCTCGGAGCTTCCCAAACCAGAGAGGAGATTCATTTGGTTGGTACAGAGGGAGTAGGTGAAGGGAAGGAAGGATAGAGATAGAAATTAGAATAGAAAGATACCTNGTAGTCTGGCCAAACCGTGAAACGACGACCAACATGGCCGTTTCGAGCTTTCACCGCGTTTTCACCTTCGAGTGCCGCTCAGATCCCGATTTCGCGTCTCTCCCATCCTCCGACAACTTCCGCCGCCGCCATTTCCCCGCCGCCGGCCTCTCCGCCGCGTTCCACGGCACCTCTTCCCTCATCCTCCGCTTCCCTCCCAACTTCCAGCGCCAGCTCAGCACCAAGGCGCGCCGCAACTGCAGNAACATCGGCGTCGCGCAAATCGTCGCAGCTTCGTGGTCCAACAACGTCCCCGCCGGCCCCGCCGCCGGGGCTCCACCTCCGCCCGCGGTGGCATCCGCCGTCGATGCCGCCACGGCTCCCCTCCCCTTGGACCTCGACGCCGACGAGGAGATCGTCGCCGCCGCCGAAAATGGGGCTGTACAGACTAACAATAGGTCTTATTCTTCGTTTTTGAAATCCGATGCAAGCAAAACGATTCATGCCGCTGAAAGACTAGGTAGGGGTATCGCAACTGATGCAATTACCACCCCCGTGGTGAACACTTCTGCCTATTTTTTTAAGAAAACCGCTGATCTTATTGATTTCAAGGAGAAACGTCATATTAGCTATGAATATGGGCGCTATGGAAACCCAACCAGTACGGTTTTAGAGGAGAAAATAAGTGAACTGGAGGGAGCTGAATCAACTGTCTTAATGGCATCTGGGATGTGTGCTAGCACAGTCATGTTGATGGCGCTGGTTCCAGCTGGTGGACATCTCGTGACCACTACGGATTGTTACAGGAAGACTAGAATATTCATAGAGACTGTGCTTCCAAAGATGGGGATCGCGACCACTGTAATTGATCCAGCAGATGTTGGAGCCTTGGAATTAGCATTGGAGCAGCACAATGTGTCTCTCTTCTTCACCGAGTCTCCTACCAATCCATTCCTCAGATGTGTTGACATTAAGCTGGTTTCAGAGCTTTGCCACAGGAAAGGGGCTTTGCTCTGCATTGATGGTACGTTTGCAACACCTTTGAACCAGAAGGCTCTCGCCCTTGGTGCTGATCTGATTTTGCACTCTTGTACAAAGTACATGGGTGGACATCATGACGTCCTTGGTGGTTGCATAAGTGGTTCTAATCAGTTGGTTTCACAAATTCGAACTTTGCATCACATTTTGGGAGGTACTCTGAACCCAAATGCTGCATACCTATTCATCAGAGGCATGAAGACACTGCATCTACGTATACAGCAGCAGAATTCAACAGGATTGAGGATGGCCGAAGTTTTAGAGGCACATCCCAAGGTGAAGCGTGTTTACTATCCAGGCTTGCCGAGTCATCCTGAACATGAGCTTGCCATGAGGCAAATGACTGGTTTCGGGGGTGTTGTCAGTTTTGAGATCGATGGAGATCTAGCAACCACAATAAAATTTATTGATTCACTGAAAATCCCTTACATTGCGGCCTCTTTTGGTGGCTGTGAGAGCATTGTGGATCAACCTGCTATTCTGTCTTACTGGGATCTTCCTCAGTCAGAAAGGGCTAAGTATAAGATTCACGACAACTTGGTTCGCTTCAGCTTTGGAGTTGAAGATTTTGAGGATTTGAAGGCTGATGTCCTGCAAGCTCTGGAAGCCATATAGACCGTATTCGTTTATTCACGCCAGTTTTTTTCTTCCTTTTTTTAATCGTGTTCTTTGTTCCTTTTTTGTTACTTCTGGCGAATGAATTGAATTATGATCGCCTAATGTTCTGTTTGGATTGTATTGTTGAAATTCAAACCTCTGTTTGACATTTAATCCTGCTTTTCCCACAAATATTAATAAGAAGTGATTTTCCTATGGAAGCTTTCATGATTCATTGTTTTCGGTTAAAACTGATGTTTTTGGCCTTTACTTTTTTTTAACTTGGGATCTAATTCCGTGCTGAAATGTATTTTTTGTTTCAATTTTGTTCTAGGAGTTGCAAACAGTACATTTATACTTAAATAATTTGAAAATTAAATGAATTCAACTGCTTTATTGTATGCGATTGNCAAGAGTCTGCGCTACCCTTCTTCCAAAGGGTGTGTTGCGGTGTTGGAGAAATTAACTCGTTTGTTCAGGGGTGTAGTGGAGATGAAAGAAAGTGGCATTCCATTACTTGGTATTATTCTCAGGAGCCTAAGAATCAAGGTGGTATGGGATTTTTCGACCTCCATTTGAAGCTCATTCGTAAGCTAGAGGGATTGTGGGTCCGAGTGGTGAGAGGCAAGTATAGATGCAGGTAGGGTTCTATGCACAAGAGAGATGCTTCTAATATGTGGGGTGGGGAATTTTCAGCATGATCTGCCTATGCTTGCGGGACAATTGAATGAAAGTGTTCCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00119	166186	170693	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01739	metB	EC:2.5.1.48	Biosynthesis of amino acids	map01230
			Sulfur metabolism	map00920
			Cysteine and methionine metabolism	map00270
			Selenocompound metabolism	map00450

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000119s00012163.1	PF01053.15	Cys_Met_Meta_PP	146	530	2.40E-138

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	147.779
SRR1783600	control	149.303
SRR1783602	moderate drought stress	79.861
SRR1811619	moderate drought stress	79.880

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	110.919
DRR006520	Root Summer glycyrrhizin high producing strain	109.952
DRR006521	Root Winter glycyrrhizin high producing strain	151.650
DRR006522	Root Winter glycyrrhizin high producing strain	147.100
DRR006523	Root Summer glycyrrhizin low producing strain	144.135
DRR006524	Root Summer glycyrrhizin low producing strain	145.224
DRR006525	Leaf Summer glycyrrhizin high producing strain	202.937
DRR006526	Leaf Summer glycyrrhizin high producing strain	202.030

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	161.476
SRR2868004	Drought Stress (root)	157.589
SRR2967015	Control (root)	130.682

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	276.834
SRR9715740	Leaf	264.254
SRR9715741	Leaf	264.255
SRR9715739	Root	95.282
SRR9715742	Root	191.885
SRR9715743	Root	168.256

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	78.642
SRR8749028	MeJA induced 9h	95.322
SRR8749029	MeJA induced 9h	153.089
SRR8749030	Uninduced	154.921
SRR8749031	Uninduced	298.607
SRR8749032	Uninduced	398.537

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	113.371
SRR8400027	Control - Root	113.934