Gene detail information of Glyur000119s00012158 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15300.1 | 5.00E-166 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004491829.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g15300-like [Cicer arietinum] |
| Swissprot | tr|Q9LXF2|PP385_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g15300 |
| trEMBL | tr|I1N4F3|I1N4F3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G49610.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00119 | 126687 | 128261 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000119s00012158.1 | PF13041.1 | PPR_2 | 73 | 122 | 1.20E-08 |
| Glyur000119s00012158.1 | PF12854.2 | PPR_1 | 172 | 203 | 2.00E-07 |
| Glyur000119s00012158.1 | PF01535.15 | PPR | 208 | 232 | 2.70E-06 |
| Glyur000119s00012158.1 | PF13041.1 | PPR_2 | 237 | 284 | 9.60E-10 |
| Glyur000119s00012158.1 | PF01535.15 | PPR | 314 | 339 | 0.046 |
| Glyur000119s00012158.1 | PF01535.15 | PPR | 343 | 370 | 2.60E-05 |
| Glyur000119s00012158.1 | PF01535.15 | PPR | 379 | 405 | 0.071 |
| Glyur000119s00012158.1 | PF01535.15 | PPR | 417 | 440 | 0.18 |
| Glyur000119s00012158.1 | PF13812.1 | PPR_3 | 483 | 511 | 0.57 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.552 |
| SRR1783600 | control | 4.564 |
| SRR1783602 | moderate drought stress | 4.650 |
| SRR1811619 | moderate drought stress | 4.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.184 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.284 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.576 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.315 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.845 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.869 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.144 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.265 |
| SRR2868004 | Drought Stress (root) | 2.914 |
| SRR2967015 | Control (root) | 3.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.184 |
| SRR9715740 | Leaf | 1.372 |
| SRR9715741 | Leaf | 0.824 |
| SRR9715739 | Root | 5.330 |
| SRR9715742 | Root | 5.845 |
| SRR9715743 | Root | 3.813 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.153 |
| SRR8749028 | MeJA induced 9h | 4.816 |
| SRR8749029 | MeJA induced 9h | 7.617 |
| SRR8749030 | Uninduced | 1.973 |
| SRR8749031 | Uninduced | 0.473 |
| SRR8749032 | Uninduced | 1.586 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.746 |
| SRR8400027 | Control - Root | 5.561 |