Gene detail information of Glyur000119s00012155 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01150.1 | 1.00E-180 | polypyrimidine tract-binding protein 1 |
| NR | XP_003534438.1 | 0 | PREDICTED: polypyrimidine tract-binding protein homolog 1-like isoformX1 [Glycine max] |
| Swissprot | tr|Q9MAC5|PTBP1_ARATH | 0 | Polypyrimidine tract-binding protein homolog 1 |
| trEMBL | tr|K7LFQ1|K7LFQ1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G37076.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00119 | 106884 | 113435 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000119s00012155.1 | PF13893.1 | RRM_5 | 33 | 93 | 5.00E-09 |
| Glyur000119s00012155.1 | PF13893.1 | RRM_5 | 261 | 320 | 4.00E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.782 |
| SRR1783600 | control | 15.815 |
| SRR1783602 | moderate drought stress | 17.238 |
| SRR1811619 | moderate drought stress | 16.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.674 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.041 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.808 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.094 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.856 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.930 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.388 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 27.164 |
| SRR2868004 | Drought Stress (root) | 28.008 |
| SRR2967015 | Control (root) | 34.721 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.553 |
| SRR9715740 | Leaf | 17.627 |
| SRR9715741 | Leaf | 18.852 |
| SRR9715739 | Root | 18.585 |
| SRR9715742 | Root | 16.120 |
| SRR9715743 | Root | 14.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.333 |
| SRR8749028 | MeJA induced 9h | 11.147 |
| SRR8749029 | MeJA induced 9h | 7.267 |
| SRR8749030 | Uninduced | 2.993 |
| SRR8749031 | Uninduced | 0.828 |
| SRR8749032 | Uninduced | 2.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.321 |
| SRR8400027 | Control - Root | 27.122 |