Gene detail information of Glyur000119s00012153 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G29030.1 | 1.00E-55 | expansin A5 |
| NR | XP_007139528.1 | 3.59E-83 | hypothetical protein PHAVU_008G037500g [Phaseolus vulgaris] |
| Swissprot | tr|Q38864|EXPA5_ARATH | 3.00E-68 | Expansin-A5 (Precursor) |
| trEMBL | tr|V7B0U1|V7B0U1_PHAVU | 1.00E-83 | Uncharacterized protein {ECO:0000313|EMBL:ESW11522.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00119 | 95821 | 106225 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000119s00012153.1 | PF03330.13 | DPBB_1 | 66 | 109 | 2.00E-13 |
| Glyur000119s00012153.1 | PF01357.16 | Pollen_allerg_1 | 111 | 175 | 3.70E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.162 |
| SRR1783600 | control | 20.539 |
| SRR1783602 | moderate drought stress | 10.077 |
| SRR1811619 | moderate drought stress | 9.851 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.250 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.427 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.303 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.436 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.709 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.982 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.314 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.315 |
| SRR2868004 | Drought Stress (root) | 7.608 |
| SRR2967015 | Control (root) | 6.457 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.441 |
| SRR9715740 | Leaf | 1.780 |
| SRR9715741 | Leaf | 3.497 |
| SRR9715739 | Root | 12.171 |
| SRR9715742 | Root | 9.903 |
| SRR9715743 | Root | 9.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.524 |
| SRR8749028 | MeJA induced 9h | 3.874 |
| SRR8749029 | MeJA induced 9h | 4.689 |
| SRR8749030 | Uninduced | 2.128 |
| SRR8749031 | Uninduced | 1.982 |
| SRR8749032 | Uninduced | 3.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 185.306 |
| SRR8400027 | Control - Root | 192.562 |