Gene detail information of Glyur000119s00012152 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G48320.1 | 9.00E-54 | Thioesterase superfamily protein |
| NR | NP_001235185.1 | 1.42E-87 | uncharacterized protein LOC100527631 [Glycine max] |
| COG | YP_006435196.1 | 1.00E-19 | hypothetical protein Fleli_3063 [Flexibacter litoralis DSM 6794] |
| trEMBL | tr|C6T4X8|C6T4X8_SOYBN | 5.00E-88 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G49560.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00119 | 88234 | 90235 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000119s00012152.1 | PF03061.17 | 4HBT | 48 | 120 | 1.50E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.084 |
| SRR1783600 | control | 8.523 |
| SRR1783602 | moderate drought stress | 5.835 |
| SRR1811619 | moderate drought stress | 6.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.786 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.438 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.968 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.006 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.686 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.791 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.649 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.800 |
| SRR2868004 | Drought Stress (root) | 5.853 |
| SRR2967015 | Control (root) | 2.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.719 |
| SRR9715740 | Leaf | 2.110 |
| SRR9715741 | Leaf | 1.827 |
| SRR9715739 | Root | 13.826 |
| SRR9715742 | Root | 6.885 |
| SRR9715743 | Root | 8.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.436 |
| SRR8749028 | MeJA induced 9h | 1.131 |
| SRR8749029 | MeJA induced 9h | 1.099 |
| SRR8749030 | Uninduced | 2.753 |
| SRR8749031 | Uninduced | 2.050 |
| SRR8749032 | Uninduced | 1.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.421 |
| SRR8400027 | Control - Root | 21.391 |