Gene detail information of Glyur000119s00012143 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50390.1 | 0 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| NR | XP_003531467.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic-like [Glycine max] |
| Swissprot | tr|Q9FK33|PP427_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g50390, chloroplastic (Precursor) |
| trEMBL | tr|K7LFQ6|K7LFQ6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G37190.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00119 | 50597 | 57099 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000119s00012143.1 | PF13812.1 | PPR_3 | 122 | 152 | 0.12 |
| Glyur000119s00012143.1 | PF13812.1 | PPR_3 | 158 | 184 | 0.57 |
| Glyur000119s00012143.1 | PF01535.15 | PPR | 189 | 215 | 0.0004 |
| Glyur000119s00012143.1 | PF01535.15 | PPR | 262 | 286 | 0.0055 |
| Glyur000119s00012143.1 | PF13041.1 | PPR_2 | 287 | 334 | 5.30E-09 |
| Glyur000119s00012143.1 | PF13041.1 | PPR_2 | 387 | 434 | 2.80E-12 |
| Glyur000119s00012143.1 | PF01535.15 | PPR | 529 | 557 | 0.69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.466 |
| SRR1783600 | control | 10.210 |
| SRR1783602 | moderate drought stress | 6.621 |
| SRR1811619 | moderate drought stress | 6.444 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.702 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.670 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.149 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.351 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.141 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.306 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.012 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.960 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.745 |
| SRR2868004 | Drought Stress (root) | 7.222 |
| SRR2967015 | Control (root) | 7.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.117 |
| SRR9715740 | Leaf | 3.979 |
| SRR9715741 | Leaf | 2.638 |
| SRR9715739 | Root | 10.039 |
| SRR9715742 | Root | 9.790 |
| SRR9715743 | Root | 9.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.013 |
| SRR8749028 | MeJA induced 9h | 2.284 |
| SRR8749029 | MeJA induced 9h | 2.164 |
| SRR8749030 | Uninduced | 0.656 |
| SRR8749031 | Uninduced | 0.232 |
| SRR8749032 | Uninduced | 0.341 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.362 |
| SRR8400027 | Control - Root | 16.551 |