Gene detail

Gene detail information of Glyur000119s00012136

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54890.1	3.00E-90	RNA-binding CRS1 / YhbY (CRM) domain-containing protein
NR	KEH16409.1	3.97E-161	CRS2-associated factor 1 [Medicago truncatula]
Swissprot	tr\|Q9FFU1\|CAF2M_ARATH	1.00E-126	CRS2-associated factor 2, mitochondrial (Precursor)
trEMBL	tr\|A0A072TFV6\|A0A072TFV6_MEDTR	1.00E-161	CRS2-associated factor 1 {ECO:0000313\|EMBL:KEH16409.1}

Sequence

Transcript Sequence

>Glyur000119s00012136.1
CCCTCGTAGATCACCACCAAGGCTTTTATTTCTGTCTGCCTCCCCAAAGATCACCACCAAATTCCAAACATTTCTTTCTCTCTGCCTCTCAAGCCTTTCGCCCTCATCCCTCTCCCTCTCCCCCAACCGATCGCCCCCTCACCCCTCTCCCTCTCCCTCTCCCCCGCAGTTGGTTCGGTCGGTGTTCTTCAGCTTGGTGCGGGTGACGCTCATTCAGGTTGGTAAGGAAAAGGTTGCGTTGGAGGGGGTCTTAGATCTCAAAAGGTTGCATTTTTATTCTCTCCCTCTGACATTATTGGCTCTGAAACGGGTTTTCGGTGAAAAAAAATACCTGTCGCGGTCCGTTTTTTAAAACCTCTGCGCCCTCCCGTTTATCACTATTCACAGCCTCACTGGCATCAGGGACTGAACAGCGGCTGCTTCAACCATAATCTAATTTTTGCCGAATGCGGCTGAACCACCTCTTTCCGTTCTCAACAAGCCGTCGTTTACCACTCTCCCTCCATCGCTTTCTCAGNCAATCCATTACCCACGACGACCTATACGACCCGCCGTTTTCCCCTTCCCCAAAGCCCCAGAAAACAAAGAAAAAGGAGGAGGATAAGAAGAAGAACTTGGACAATGGAGCTCCGAATAATACCAAAGGAGACCCGAATCTTCTTCCTCTAAAATCGGACCTTCCCTTTGACTTCAGGTACTCTTATTCAGAGGCCGACCCTTCCATAAAACCAATCAGCTTCCGCGAATCGCCCAAGTTCTCTCCTTTCGGACCGGGCCGNCTCGACCGCAACTGGACCGGTACTTCTGCCCCGGTTCAGCACGAACTGGACCGGATGAGGTTTGAAGAGGAGCGGGACCGGGTTCTTGGAGCCCCGCTAGAGGAGGAGGAAGTGGCGGAGCTCGTCGAACGCTACCGTCATAGTGACTGTGCTCGGCAAATCAATCTGGCTGTGAGGATTAAGTGCTTGGGTGTGCCAACTCTTGACATGGACAATGTCTGCTTCCACCTTGAGGACAAGTCTGGTGGGAAAATTATCTACCGCAACATGAATATANTGCTCTTGTACAGGGGACGGAATTACAATCCCAAGAACCGTCCAGTTATCCCTCTTATGCTGTGGAAGCCTTATGCACCAATATATCCTAGGCTTGTGAACAATGTAGTTGAAGGTTTGACACATGAGGAAACANAAGAATTGAGAAACAAGGGATTGAACTCACATCCTCTGATGAAACTTACCAGAAATGGTGTCTATGTGNATGTGGTGGAGAGGGTGAGGGAAGCTTTTAAGACTGAGGAGGTTGTGAGACTGGACTGCACCCATGTGGGTACAAGTGACTGCAAAAAGATTGGAGTGAAGCTAAGGGAAAGAGCTACCACGGAACGAGACAAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00119	3297	6581	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000119s00012136.1	PF01985.16	CRS1_YhbY	169	208	0.00015
Glyur000119s00012136.1	PF01985.16	CRS1_YhbY	243	309	1.30E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.499
SRR1783600	control	6.976
SRR1783602	moderate drought stress	7.664
SRR1811619	moderate drought stress	7.161

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.016
DRR006520	Root Summer glycyrrhizin high producing strain	5.561
DRR006521	Root Winter glycyrrhizin high producing strain	4.427
DRR006522	Root Winter glycyrrhizin high producing strain	4.304
DRR006523	Root Summer glycyrrhizin low producing strain	4.902
DRR006524	Root Summer glycyrrhizin low producing strain	5.071
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.667
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.787

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.044
SRR2868004	Drought Stress (root)	7.710
SRR2967015	Control (root)	10.975

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.868
SRR9715740	Leaf	2.533
SRR9715741	Leaf	2.606
SRR9715739	Root	2.283
SRR9715742	Root	4.969
SRR9715743	Root	3.967

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.939
SRR8749028	MeJA induced 9h	5.499
SRR8749029	MeJA induced 9h	3.702
SRR8749030	Uninduced	1.147
SRR8749031	Uninduced	1.222
SRR8749032	Uninduced	1.071

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.598
SRR8400027	Control - Root	10.009