Gene detail information of Glyur000118s00009680 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06300.1 | 6.00E-77 | Putative lysine decarboxylase family protein |
| NR | KHN09096.1 | 2.15E-123 | Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Glycine soja] |
| COG | YP_686619.1 | 1.00E-56 | hypothetical protein RCIX2172 [Methanocella arvoryzae MRE50] |
| Swissprot | tr|Q8L8B8|LOG3_ARATH | 5.00E-96 | Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 |
| trEMBL | tr|C6TLU1|C6TLU1_SOYBN | 2.00E-108 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G37660.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00118 | 310950 | 316576 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000118s00009680.1 | PF03641.9 | Lysine_decarbox | 65 | 187 | 9.60E-43 |
| Glyur000118s00009680.1 | PF03641.9 | Lysine_decarbox | 239 | 281 | 6.40E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.071 |
| SRR1783600 | control | 0.085 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.582 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.380 |
| SRR2868004 | Drought Stress (root) | 4.940 |
| SRR2967015 | Control (root) | 3.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.499 |
| SRR9715740 | Leaf | 1.999 |
| SRR9715741 | Leaf | 6.898 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.278 |
| SRR9715743 | Root | 0.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.051 |
| SRR8749029 | MeJA induced 9h | 0.080 |
| SRR8749030 | Uninduced | 0.125 |
| SRR8749031 | Uninduced | 0.059 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.606 |
| SRR8400027 | Control - Root | 2.420 |