Gene detail

Gene detail information of Glyur000118s00009679

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G01310.1	0	APRATAXIN-like
NR	AES59709.2	0	transcription factor bHLH140-like protein [Medicago truncatula]
COG	YP_001002487.1	8.00E-07	appr-1-p processing domain-containing protein [Halorhodospira halophila SL1]
Swissprot	tr\|Q9M041\|BH140_ARATH	0	Transcription factor bHLH140
trEMBL	tr\|G7I746\|G7I746_MEDTR	0	Transcription factor bHLH140-like protein {ECO:0000313\|EMBL:AES59709.2}

Sequence

Transcript Sequence

>Glyur000118s00009679.1
CATATACTCATACACTTCTAACAAATAATATGTTGTGTGTATTTTTAACATGTAGACACTTTTAATTTTTAAACACTCCCACTGCATACTCATTGATGATTTTTGTGCATCCATCTTTGGAAATTTGCAAATCACATAGAACTCACCTACGCTTTATCGCGTGGCAACCGATACAACTCCGAAACTCGCAGGCGGCAGAGCAGTGACAGAATATTGAAGGAGAAGGAGAAGGTCGAGTTTGAAGATGGACATGGACGAAACTTCTGGACTCAAAGAGGGAGGAAAACCCGTTTTGGTGATCTTAGTGGGAGCACCAGGGAGCGGGAAATCCACCTTCTGTGAAGAGGTGATGCGTTCCTCTACTCGCCCTTGGGTTCGCGTTTGCCAGGACACTATTGGAAATGGTAAGGCAGGAAATAAAGCTCAATGCCTAAGCAGTGCAGCTAGAGCATTGAAGGATGGGAAGAGTGTATTTATTGACAGGTGCAATCTTGAAAGAGAACAGCGCTCAGAATTTATAAAGCTTAGTGGTGGGCCCCNAATAGATATCCATGCGGTTGTACTTGATCTCCCCGCTAAGCTGTGTATTTCTCGATCTGTCAAACGAACTGGGCATGAAGGAAATTTGCAGGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAAAAGAAAGAGCTGCCCAAACTAAGTGAAGGCTTTAACCGGATAACATTTTGTCAGAATGAGAGTGATGTCAAAGATGCTATTAATACATACAGCACACTTGGGCCGCTGGATAACCTTCCACNTGGCTGCTTTGGTCAGAAGAATCCAGATTCCAAAATTCAAGTTGGTATAATGAAGTTCCTAAAAAAGGCAGAGGTCCCAGCTGATACTACATCCAAAAAGAATGGCATTGGAGACTCTACTTCTCAGACTCCTGGAAAAAATGATTCCCAATGCAAAGATATGGAAAAAATTCCCACAACGCCAGATAATGCCAACTTAGAGTCAAAGGAAGTAGGAGGCCAAGCTGCTGGCTCTGCCGGTTCCCATGGCAGTCAAGTTTCTCTGGATAATACTCCCACTCTGGCATTTCCATCTATTTCAACATCTGATTTCCAATTCAACAATGAGAAAGCAGCTGATATTATTGTTGAGAAGGTCGCAGAGTTTTCAAATAAGATAGGGAATGCCAGACTTGTTCTAGTTGACTTGACTCATAAGTCAAAGATTCTGTCCTTAGTTAAAGCCAAAGTGGCAGAAAAGAACATTGACACCCAAAAGTTCTTTACCCATGTTGGAGACATTACTCACCTTTATTCCACGGGAGGTTTGCGCTGTAATGTCATAGCTAATGCTGCCAACTGGCGGTTAAAACCTGGTGGTGGAGGTGTTAATGCAGCCATTTTTAATGCTGCGGGTCCTGAACTGGAGTCTGCAACGAAAGAAAAAGCAAAATCTCTTTCACCTGGAAATGCTGTTGTTGTCCCTCTACCTTCATCTTCTCCATTGTTCACTAGAGAGGGTGTAACCCATGTAATACATGTTCTTGGACCTAATATGAACCCACAAAGACCAAATTGTCTGAACAATGATTATGAAAAAGGCTGCAAAATTCTCCGAGATGCTTATGCATCACTATTTGAAGGTTTTGCATTGATTATGAGGAACCAGGTAGAGCAACCTAGAGGAAGAAATGAAAAACTTGGAAAAAAGTCATTGGAGTCGCAGGATCAGTCTGAATGTTGTTCCACAAATCATTTCACAAATACTGATCAAAAGAGTAAGAGAGATGCTGATAATACATCAGAAAAAACCAAGAGATACAAGGGAAATCAAGATGGTTTTGGATTGACCTTATCTGATTCGAGGGATGAAAAGGTAGATTCAGAGCATAGAAGACCTGATGGGAGCAAGAGTAAGGCATGGGGATCATGGGCTCAAGCTCTTCACCACATAGCTATGCATCCTGAAAAGCATAAGGATGACTTGCTTGAAATTTCGGAAGATATTGTTGTATTGAATGATATGTATCCTAAGGCACAGAAGCATGTTCTGGTATTGGCACGAACTGGAGGTCTTGATTGCTTGTCAGATGTCCAAAATGGGCACCTTCCTTTATTGAAGAAGATGCATGCTGTGGGTTTAAAATGGGCTGAGAAGTTCTTGCACGAGAATGCTTCACTTGTATTTCGTCTTGGATATCACTCGGCTCCGTCAATGCGACAGCTACATCTACATGCTATTAGCCAGGACTTTGACTCAAAACATTTGAAGAATAAGAAGCACTGGAACTCGTTTAACACCGCTTTCTTTCGTGACTCGGTAGATGTAATTGATGAGGTTTCTAATCATGGAAAAGCAACATTGAACGATGATGACAAGTTAATGTCTATGGAGTTGAGGTGCCACAGATGTAGAAGTGCACATCCAAACATACCCCGGTTAAAATCGCATATTAGCAGCTGCAAAGCACCCTTTCCTTCTTACCTTCTTGAAAAAGCACGTTTGGTGCATGCCACCAGGTAAAGGTAAACCCCACAACAGTTTCTAGTGTTTCAAGTTTTTGTTCACACTGCTGCTAAGCCACCCTAGTTTTGAGCTAGCCTTTTGAGTACACTGAGGTAAAACCCCCATTGTGTAGTTACAGACTGAAATATTTTTGCTATCTATGACGGGAAAAGAAAGAGAGTTTATTTTCACCTTACATTAACGATTATGGCTTGATGGAATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00118	305317	310008	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006281 DNA repair

molecular_function

GO:0003677 DNA binding

GO:0003824 catalytic activity

GO:0033699 DNA 5'-adenosine monophosphate hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000118s00009679.1	PF13671.1	AAA_33	17	147	7.60E-25
Glyur000118s00009679.1	PF01661.16	Macro	365	444	2.30E-08
Glyur000118s00009679.1	PF11969.3	DcpS_C	572	677	8.70E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.986
SRR1783600	control	7.945
SRR1783602	moderate drought stress	5.113
SRR1811619	moderate drought stress	5.013

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.141
DRR006520	Root Summer glycyrrhizin high producing strain	8.097
DRR006521	Root Winter glycyrrhizin high producing strain	10.074
DRR006522	Root Winter glycyrrhizin high producing strain	9.728
DRR006523	Root Summer glycyrrhizin low producing strain	4.912
DRR006524	Root Summer glycyrrhizin low producing strain	4.926
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.924
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.940

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.254
SRR2868004	Drought Stress (root)	7.904
SRR2967015	Control (root)	8.356

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.129
SRR9715740	Leaf	2.302
SRR9715741	Leaf	1.795
SRR9715739	Root	0.755
SRR9715742	Root	4.895
SRR9715743	Root	3.294

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.535
SRR8749028	MeJA induced 9h	9.720
SRR8749029	MeJA induced 9h	8.416
SRR8749030	Uninduced	4.181
SRR8749031	Uninduced	1.663
SRR8749032	Uninduced	2.297

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.337
SRR8400027	Control - Root	9.958