Gene detail

Gene detail information of Glyur000118s00009675

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G42560.1	1.00E-83	Abscisic acid-responsive (TB2/DP1, HVA22) family protein
NR	NP_001242295.1	2.29E-168	uncharacterized protein LOC100783207 [Glycine max]
Swissprot	tr\|Q8LE10\|HA22I_ARATH	4.00E-110	HVA22-like protein i
trEMBL	tr\|C6T7S4\|C6T7S4_SOYBN	9.00E-169	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU17876.1}

Sequence

Transcript Sequence

>Glyur000118s00009675.1
AGGGTCATAATTCATAAGAAACACACAATAATTCCCCTCTACTAGTAGAGTTCTACACTTGCTACTCACTCTGTTCATTAGCAAATTGCAAAGGAACGATTTAAACGGCTCCTCTAACAACAACAACATACTTCAATCTCTCTCTCTCTCTCTCTCTCCCTTTTTTTCCTTTCTGTTTCATTTTCTCCACTCACTGTTACTTTTCACCCGTATCTCTCGCCGACAACGTAACGGTTCGCCGTAACCGTTTCCGGCACCGGCGCCGGCGCCGATCTTTCTCAATCTCCACCGCCAGATTTATCTATCTCTACTTGTTAACTCTTCTCATTTCGGATTTACACTACACACTACACTTTCCTTCTTCCTCTTTCTCTTTCTCCTCTGCAACACATTCTACTTCAGGGATACAGAATGATAGGATCCTTTCTTACCTGGGCNCTTGTGATGCTTTTTGGCTATGCTTATCCAGCCTATGAATGCTATAAAGCAGTTGAAAAGAATAAGCCGGAGATTGAACAACTTCGCTTTTGGTGCCAGTATTGGATTTTGGTGGCTGTTTTGACAGTATGTGAGAGAATTGGTGATACTTTTATATCATGGGTCCCAATGTATAGTGAAGCTAAGTTGGCATTTTTCATATTTCTGTGGTACCCCAAGACAAAGGGAACGACGTATGTGTATGATTCCTTCTTTAGACCATATGTTGCAAAACATGAGACAGAAATTGATCGCAACTTGTTGGAACTAAGGACAAGGGCAGGAGATATTGCAGTTTTGTATTGGCAAAGAGCTGCTAGTTACGGTCAGACTAGAATATATGACATTATGAAGTTTGTTGCAGCACAATCAACACCATCACCTCGCCCTGCTCAGCAACGACCAGGTGTGAAGGTCCGTCAGCCTGCCCCTGCTAATGGCAAACCAGCTGCTGCAACAGAACCAAAAGTCGAGGAACCTCCATCTCCTGCCTCTAGCACATCTTCAAGTCAGTTCCAGAAGGAAGTAGCAGAGGAGTTGGGTTCTCCACAAGTGCCTAAAGCAGCAGCCTCTCCTGTTGCCGGTTTAGGTAACAAGAAGCCTCCTGTGACTGGTTTAAGTACTCAGAAGTCTTCTGTAGCAAGTTTAAGTACCCAGAAGTCTTCTGTAGCAAGTTTGATTTCCCAGAAGTCTAATCCTACTCCTACATCTGGAACAACCAAAAAACCTGCATCAGCAGAGGCAGAGCCAAAGCAGATTGAAGCAGCATCATCTTCATCCCCTTCAGCAAATGAAAATGAGAACCCTCCTATAAAGGAGACCATAATGGAAGAAAGCATTCGGGTTACACGAGGCAGACTAAGAAAGACACGATCAGCGTCAACCCACTAGCACAATATTATCAATATTATCAATTTTTAGCCTGGAATAGGGATAGGTGGACAACGATGACCGTTAAATTGTTGTAAAACTTCATGTAAATCTGGTTGCCTCAGTTTTCATTCCATTTGTTGCTTCATTTTTTTCTTNTAAAATTTTTGTCTAGGCATGGAATCGTTAGTAGCAAGATGCCACTTCATCAACAAGTTTTCGAGGGAAGGCAGAACTTAACCTCCCCATCCCTTTTTGCATGCTTTAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00118	288131	291493	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000118s00009675.1	PF03134.14	TB2_DP1_HVA22	5	98	2.50E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.195
SRR1783600	control	7.421
SRR1783602	moderate drought stress	5.817
SRR1811619	moderate drought stress	5.828

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.902
DRR006520	Root Summer glycyrrhizin high producing strain	19.906
DRR006521	Root Winter glycyrrhizin high producing strain	0.344
DRR006522	Root Winter glycyrrhizin high producing strain	0.287
DRR006523	Root Summer glycyrrhizin low producing strain	4.974
DRR006524	Root Summer glycyrrhizin low producing strain	4.948
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.137
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.149

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.196
SRR2868004	Drought Stress (root)	14.970
SRR2967015	Control (root)	15.311

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.894
SRR9715740	Leaf	1.309
SRR9715741	Leaf	2.381
SRR9715739	Root	4.099
SRR9715742	Root	6.374
SRR9715743	Root	5.514

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.589
SRR8749028	MeJA induced 9h	8.472
SRR8749029	MeJA induced 9h	11.018
SRR8749030	Uninduced	1.257
SRR8749031	Uninduced	0.142
SRR8749032	Uninduced	1.195

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.625
SRR8400027	Control - Root	34.155