Gene detail

Gene detail information of Glyur000118s00009674

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45730.1	2.00E-143	eukaryotic initiation factor 3 gamma subunit family protein
NR	XP_006601347.1	0	PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like [Glycine max]
trEMBL	tr\|I1MY27\|I1MY27_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G37700.1}

Sequence

Transcript Sequence

>Glyur000118s00009674.1
ATGAGTGAGAATAATGGAAGTTGTAGAATCACGTCGGAAGGTTGCAGCGTCTTGCTTGANATCAACGACGGTGACCGTCTCGTCTTCGCTCGTCTCTCCCCTGCAGCGAAATTGAAGATTGGGAATAAGAACTGCTCTCTGCAGCCGTTGATTGGTTGTCCCTTTGGCAATGTTAATAATAATACTGAAGAAATAAAAGATGGTCAAGTCAATGTTGAGTCAAGGGACAATCGGTCTTTGATNGACAATAATACGGCCCAGAGCTTGACTGGTGAAGATATAGAAGCCATGCGAAGGCAGGGTGCAAAAGGAAATGAAATAATTGACGCTCTGATTGCCAATAGTGCAACATTTGAAAAGAAAACAGCATTCTCACAGGAGAAATATAGACTTAAGAAGCAGAAGAAATATGCACCAAAAGTACTTATGAGGCGTCCTGTTGCTCGAAGTATATGTGAGGCCTATTTTAAGAAGTATCCATCTAAAATTGGATTCTTGCGGGTGGACACATTGTCCCTTCTACTTTCTATGGCTAATGTTTCTTCAAATTCTGACATTCTCCTAGTTGATATGGTTGGTGGCCTTCTTACTGGTGCTGTGGCAGAACGTTTAGGAGGCACTGGTTTTNTATGTAACTCATATCTTGGACAGGCACCATATTCCATGGATATCGTGAGGATATTTAATTTAAGTGATGAAATCTGCAAGAGAATTGTAAGGTCTTCCATTTCTGATCTGTTGTCACAAAAAGAATCACCTGAACAAAATCGACCACATGATGATGTCTGCAATGTGGAAATCNAGTCAAATGATCAAATGTGTGCATCAGTCAGCATGGAGGAAATCTCTCATTCATCAGAAAATGGAATTTCTGATCTTGGTGCTGAGAATACTGAGAATACCACCATTCCTGCTATAAAAGCTTGCAAAGCTACAAAGGCGGGAGAAAAGGCATCTCAAGAAATCATTGGCTTATGGAAGGAAAATGGTTTTTCTAGCCTAATTATTGCTGCACCAGAGTTGGATACTTGGACATTGGTTAGAGACCTCTTGCCCCTTTTGTCAAACTCTGCTCCTTTTGCTATTTATCACCAATATCTTCAGCCTCTTGCAACTTGCATGCATAATCTACAGCTTGAGAAAATGGCCATTGGATTGCAAATATCAGAGCCTTGGCTACGTGAATACCAGGTACTTCCATCAAGAACTCACCCGTGCATGCAGATGAGTTCATTTGGGGGCTACATTCTCAGTGGTACCAAGATATGCAGTAGCTGATTGCAGCTCCACCATAGTAGTTTTGCTTTGAATTGAATACTCCTAAATATGTCCAATGTACACTAGTTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00118	281260	287024	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030488 tRNA methylation

cellular_component
GO:0031515 tRNA (m1A) methyltransferase complex

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000118s00009674.1	PF04189.8	Gcd10p	17	245	4.30E-58

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.323
SRR1783600	control	13.678
SRR1783602	moderate drought stress	11.885
SRR1811619	moderate drought stress	12.072

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.738
DRR006520	Root Summer glycyrrhizin high producing strain	18.730
DRR006521	Root Winter glycyrrhizin high producing strain	9.108
DRR006522	Root Winter glycyrrhizin high producing strain	9.336
DRR006523	Root Summer glycyrrhizin low producing strain	22.544
DRR006524	Root Summer glycyrrhizin low producing strain	22.248
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.919
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.636

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.718
SRR2868004	Drought Stress (root)	13.014
SRR2967015	Control (root)	13.475

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.141
SRR9715740	Leaf	11.483
SRR9715741	Leaf	10.674
SRR9715739	Root	3.790
SRR9715742	Root	11.403
SRR9715743	Root	7.775

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	36.330
SRR8749028	MeJA induced 9h	18.957
SRR8749029	MeJA induced 9h	20.773
SRR8749030	Uninduced	5.106
SRR8749031	Uninduced	3.857
SRR8749032	Uninduced	7.538

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.283
SRR8400027	Control - Root	14.717