Gene detail

Gene detail information of Glyur000118s00009670

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G47830.1	4.00E-74	SNARE-like superfamily protein
NR	NP_001236195.1	8.19E-98	uncharacterized protein LOC100500054 [Glycine max]
Swissprot	tr\|Q84WL9\|AP2S_ARATH	2.00E-94	AP-2 complex subunit sigma
trEMBL	tr\|V7CUV2\|V7CUV2_PHAVU	3.00E-98	Uncharacterized protein {ECO:0000313\|EMBL:ESW32661.1}

Sequence

Transcript Sequence

>Glyur000118s00009670.1
CTCCGTGGCGAAAATGGAAAATTAAAAAATAAACAAAAAAAAAGAGCTGGAAAGTAAACTGGTTCAATTCAATTCAAAGCATCGTCTCTTGAAGGAGTTGCCATTGAAAGAAAAAAAAAAAGTTCAGCTGCACCGTTCTCCCAATCCCTTAATTGCAAATCGATTTCTACATCGTTGGAAATGATCCGATTCATTCTGTTGCAGAACAGGCAGGGGAAGACCCGTTTAGCCAAATACTACGTTCCTCTCGAGGATTCCGAGAAGCATAAGGTCGAATACGAGGTTCATCGCCTCGTGGTAAACAGAGACCCCAAATATACAAATTTCGTCGAGTTTCGTACCCACAAGATAATATACAGGCGATATGCTGGCTTGTTTTTCTCACTTTGTGTTGACATCACTGATAATGAGTTGGCATATTTAGAGTGCATCCATTTATTTGTGGAAATATTGGATCACTTCTTCAGCAATGTTTGCGAACTGGATTTGGTGTTTAACTTCCACAAGGTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGCTATCATTGAGAGAATGGGGGAACTGGAAAAACTAGAGTGAAACGTTACATTTCGGCACAGAGTCACATTGGTCTGGAGATTCTGATGATTTGCTAATGCACTTGGCATAATTCTTGTAATTCAATTGTGATACAGAGTTTTGAAAATCTTTTCCCTTGAGCCATGTATTCAATACACTATCTAGGCTTCTTACTCGGCTTGTGTTAATATATTGAAGACATTCATAAAGTCAGGGTTTTTAGTAAACCCTCTTTCATTGTTCCTTCTTTGTGTTTTGTTAAAAAATGTTCTTTGCGCTTCTTGGTAGTTAGTAGCACTATAGGGAATACAACTGGATAATTATAATTAGGGTTAAATATGTTTTTGGTCCCTGTAATATTTCAGATTTTGAATTTAGTCTCTATAATAAAAGTCATACTTTTTTAGTCCTCCTTTTATTTTTATTTTTTGATTTTAGTCCCTGGAGTGAGTTGACCGCTTATGTGGCACTCCTACGTGGCAAAAATATTGACGTGGCTTGTATAAATGACACATTATCTTATACATCTCTATAAACATATTACGTTTTGAATTTAGTCCTAAAAAAAACATATTTTGAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00118	246687	249337	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0015031 protein transport

cellular_component
GO:0030122 AP-2 adaptor complex

molecular_function
GO:0008565 protein transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000118s00009670.1	PF01217.15	Clat_adaptor_s	1	141	1.00E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	58.158
SRR1783600	control	58.220
SRR1783602	moderate drought stress	34.434
SRR1811619	moderate drought stress	34.393

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	52.238
DRR006520	Root Summer glycyrrhizin high producing strain	51.768
DRR006521	Root Winter glycyrrhizin high producing strain	39.868
DRR006522	Root Winter glycyrrhizin high producing strain	38.777
DRR006523	Root Summer glycyrrhizin low producing strain	50.360
DRR006524	Root Summer glycyrrhizin low producing strain	50.346
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.636
DRR006526	Leaf Summer glycyrrhizin high producing strain	31.517

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	67.061
SRR2868004	Drought Stress (root)	59.042
SRR2967015	Control (root)	49.114

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.465
SRR9715740	Leaf	33.205
SRR9715741	Leaf	41.052
SRR9715739	Root	14.925
SRR9715742	Root	20.798
SRR9715743	Root	19.791

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	160.427
SRR8749028	MeJA induced 9h	76.676
SRR8749029	MeJA induced 9h	130.031
SRR8749030	Uninduced	100.159
SRR8749031	Uninduced	101.788
SRR8749032	Uninduced	87.131

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.216
SRR8400027	Control - Root	53.155