Gene detail information of Glyur000118s00009666 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75750.1 | 8.00E-25 | GAST1 protein homolog 1 |
| NR | XP_003589486.1 | 1.54E-50 | Gibberellin-regulated protein [Medicago truncatula] |
| Swissprot | tr|Q93X17|SNAK2_SOLTU | 3.00E-36 | Snakin-2 (Precursor) |
| trEMBL | tr|G7I774|G7I774_MEDTR | 6.00E-51 | GASA/GAST/Snakin {ECO:0000313|EMBL:AES59737.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00118 | 220039 | 221299 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000118s00009666.1 | PF02704.9 | GASA | 41 | 100 | 2.70E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 38.120 |
| SRR1783600 | control | 37.947 |
| SRR1783602 | moderate drought stress | 478.782 |
| SRR1811619 | moderate drought stress | 478.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.555 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.033 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 896.922 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 871.418 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 78.020 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 78.705 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 809.519 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 806.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 98.954 |
| SRR2868004 | Drought Stress (root) | 64.231 |
| SRR2967015 | Control (root) | 44.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 493.156 |
| SRR9715740 | Leaf | 810.200 |
| SRR9715741 | Leaf | 503.826 |
| SRR9715739 | Root | 3.080 |
| SRR9715742 | Root | 6.975 |
| SRR9715743 | Root | 8.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3773.948 |
| SRR8749028 | MeJA induced 9h | 6906.791 |
| SRR8749029 | MeJA induced 9h | 4246.688 |
| SRR8749030 | Uninduced | 3302.042 |
| SRR8749031 | Uninduced | 1942.734 |
| SRR8749032 | Uninduced | 4938.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.337 |
| SRR8400027 | Control - Root | 17.475 |