Gene detail information of Glyur000118s00009656 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24180.1 | 7.00E-89 | THAUMATIN-LIKE PROTEIN 1 |
| NR | XP_006601355.1 | 1.06E-174 | PREDICTED: pathogenesis-related protein 5-like [Glycine max] |
| Swissprot | tr|P28493|PR5_ARATH | 4.00E-79 | Pathogenesis-related protein 5 (Precursor) |
| trEMBL | tr|K7MP23|K7MP23_SOYBN | 4.00E-175 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G37810.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00118 | 166314 | 168123 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000118s00009656.1 | PF00314.12 | Thaumatin | 71 | 281 | 1.70E-83 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.726 |
| SRR1783600 | control | 0.799 |
| SRR1783602 | moderate drought stress | 0.516 |
| SRR1811619 | moderate drought stress | 0.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.691 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.391 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.175 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.171 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.830 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.215 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.657 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.187 |
| SRR2868004 | Drought Stress (root) | 3.428 |
| SRR2967015 | Control (root) | 2.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.011 |
| SRR9715741 | Leaf | 0.051 |
| SRR9715739 | Root | 0.311 |
| SRR9715742 | Root | 2.715 |
| SRR9715743 | Root | 2.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.122 |
| SRR8749028 | MeJA induced 9h | 0.781 |
| SRR8749029 | MeJA induced 9h | 0.837 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.341 |
| SRR8749032 | Uninduced | 0.791 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.731 |
| SRR8400027 | Control - Root | 1.241 |