Gene detail

Gene detail information of Glyur000118s00009652

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24190.2	0	Chaperone protein htpG family protein
NR	XP_003545030.1	0	PREDICTED: endoplasmin homolog isoform X1 [Glycine max]
COG	YP_156227.1	2.00E-141	molecular chaperone HtpG [Idiomarina loihiensis L2TR]
Swissprot	tr\|P35016\|ENPL_CATRO	0	Endoplasmin homolog (Precursor)
trEMBL	tr\|I1MC32\|I1MC32_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G40320.2}

Sequence

Transcript Sequence

>Glyur000118s00009652.1
AATTCCAATCTAAAACTAAACGAAACGTTTGATTTCAGTGGTGGAAGCTACTAGAAACTTGCGCACACTGCNATGAGGAAGTGGACGATCCCTTCCACGCTCCTTCTACTCTCTCTTCTCCTTCTCTTCGCAGATCAAGGTCGAAAGTTTCAGGCGAATGCGGAGGGTGATTCCGAAGAGCTTGTAGATCCACCTAAGGTGGAGGACAAGATCGGTGCTGTTCCACATGGCCTTTCCACCGATTCAGATAGATCGCTTCGTAGCAATGCGGAGAAGTTTGAGTTCCAAGCGGAAGTGTCACGGCTTATGGATATTATCATCAACTCACTCTACAGTAACAAAGACATCTTCCTCAGGGAGCTGATCTCCAATGCTTCTGACGCATTGGACAAGATTAGGTTCCTCTCCCTCACGGATAAGGAGATTTTGGGTGAAGGTGACAACGCCAAGCTTGAAATCCAGATTAAGTTAGACAAGGAAAAGAAAATTCTATCTATTCGAGACAGAGGTATTGGTATGACAAAGGAGGATTTAGTAAAGAATTTGGGGACCATCGCAAAATCTGGAACCTCAGCATTTGTTGAGAAAATGCAGACAAGCGGTGATCTTAATCTAATTGGGCAGTTCGGAGTTGGGTTCTACTCTGTGTATCTTGTGGCTGACTATGTTGAAGTCATCAGCAAGCATAATGATGATAAACAGTATGTATGGGAATCAAAAGCTGATGGAGCATTTGCAATTTCAGAAGATACATGGAATGAACCACTAGGACGTGGAACAGAGATTAGGTTACACCTCAAAGAAGAGGCTGGGGAGTACTTGGAGGAGTTTAAGCTGAAAGAATTGGTAAAGAGGTACTCTGAATTTATAAACTTCCCTATCTATATTTGGGCAAGCAAAGAGGTTGATGTGGAGGTTCCTGCTGATGAAGATGAGTCTAGTGATGAAGAGGATTCGACTGAAAGCTCCTCCAAGGATGAAAGTGAAGATGAAGATGCTGATAAAAGTGAAGATGAAGAAAAAAAGCCTAAAACAAAGACGGTGAAGGAAACAACTTATGAGTGGGAACTTTTAAATGATGTGAAAGCCATATGGCTGAGGAATCCAAAGGAGGTTACAGAGGAAGAGTACACCAAATTCTACCACTCTCTTGCCAAGGACTTTAGTGATGACAAACCTTTAGCATGGAGTCACTTTACTGCTGAAGGAGATGTTGAGTTCAAAGCAGTCCTGTATGTGCCACCTAAGGCACCTCAAGATTTATATGAGAGTTATTATAATTCAAACAAATCCAACCTGAAGTTGTATGTTCGACGAGTGTTTATTTCAGATGAATTTGATGAATTGTTACCCAAGTATCTAAGCTTTTTGAAGGGCCTTGTTGATTCTGACACATTGCCACTTAATGTATCTCGAGAAATGCTTCAACAACATAGTAGTCTAAAGACAATCAAGAAGAAACTTATTAGGAAAGCCCTTGATATGATCCGTAAGATTGCTGATGAGGATCCTGATGAGTCCACTGACAAAGAAAAGAAAGAAGAGACATCCTCTGACATTGACGAGAAGAGAGGTCAATATGCCAAGTTCTGGAATGAGTTTGGGAAATCCATTAAACTTGGTATCATTGAGGATGCCACCAACAGAAATCGTTTGGCAAAACTGCTCAGATTTGAGAGCACCAAGTCTGAGGGTAAATTGGTATCTCTCGATCAGTACATATCTAGAATGAAATCTGGACAGAAGGATATCTTTTACATAACTGGAACCAGCAAAGAACAGCTGGAAAAATCTCCATTCCTTGAGCGGCTTAAGAAGAAAAATTATGAGGTTATTTTCTTCACGGATCCAGTTGATGAATACTTGATGCAATACCTGATGGATTATGAAGACAAAAAGTTCCAAAACGTGTCCAAGGAGGGTCTGAAACTTGGGAAGGATGCAAAAGACAAGGAACTGAAGGAATCCTTCAAGGATCTTACCAAGTGGTGGAAAACTGCCCTTGCCAGTGAAAATGTTGATGATGTGAAGATATCCAATCGGTTGGATAACACTCCCTGTGTAGTGGTGACATCAAAATTTGGTTGGAGTGCAAACATGGAGAGAATCATGCAGTCTCAAACTTTGTCAGATGCTAGTAAGCAAGCATATATGCGCGGCAAGAGGGATGAGAGCGTGAAGCAAACGGCACAGCTNATGTACCAGACTGCACTCTTCGAAAGTGGCTTCCTGCTGAATGATCCAAAGGATTTCGCTTCCCGAATTTATGATTCAGTGAAATCTAGCTTAGACATTAGTCCTGAAGCAACAGTTGAAGAGGAAGATGAAACCGAAGTCGAGGCTGATAGTGAAGCAAAAGATGAAGCAACCACTTCAAAGCCTGACGCTGATGCGGCTAATGATGATGGCAAGGACGAGTTCACCAAGTCTGAGGGTAAATTGGTATCTCTCGATCAGTACATATCTAGAATGAAATCTGGACAGAAGGATATCTTTTACATAACTGGAACCAGCAAAGAACAGCTGGAAAAATCTCCATTCCTTGAGCGGCTTAAGAAGAAAAATTATGAGGTTATTTTCTTCACGGATCCAGTTGATGAATACTTGATGCAATACCTGATGGATTATGAAGACAAAAAGTTCCAAAACGTGTCCAAGGAGGGTCTGAAACTTGGGAAGGATGCAAAAGACAAGGAACTGAAGGAATCCTTCAAGGATCTTACCAAGTGGTGGAAAACTGCCCTTGCCAGTGAAAATGTTGATGATGTGAAGATATCCAATCGGTTGGATAACACTCCCTGTGTAGTGGTGACATCAAAATTTGGTTGGAGTGCAAACATGGAGAGAATCATGCAGTCTCAAACTTTGTCAGATGCTAGTAAGCAAGCATATATGCGCGGCAAGAGGGATGAGAGCGTGAAGCAAACGGCACAGCTAATGTACCAGACTGCACTCTTCGAAAGTGGCTTCCTGCTGAATGATCCAAAGGATTTCGCTTCCCGAATTTATGATTCAGTGAAATCTAGCTTAGACATTAGTCCTGAAGCAACAGTTGAAGAGGAAGATGAAACCGAAGTCGAGGCTGATAGTGAAGCAAAAGATGAAGCAACCACTTCAAAGCCTGACGCTGATGCGGCTAATGATGATGGCAAGGACGAGTTTGTAGCAACAATACCGCGCCTCTTTATTTATAATTACCAGTGTTTGATGCCTCAAATTCAACTTTAA

Protein Sequence

>Glyur000118s00009652.1
MRKWTIPSTLLLLSLLLLFADQGRKFQANAEGDSEELVDPPKVEDKIGAVPHGLSTDSDRSLRSNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEILGEGDNAKLEIQIKLDKEKKILSIRDRGIGMTKEDLVKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLKEEAGEYLEEFKLKELVKRYSEFINFPIYIWASKEVDVEVPADEDESSDEEDSTESSSKDESEDEDADKSEDEEKKPKTKTVKETTYEWELLNDVKAIWLRNPKEVTEEEYTKFYHSLAKDFSDDKPLAWSHFTAEGDVEFKAVLYVPPKAPQDLYESYYNSNKSNLKLYVRRVFISDEFDELLPKYLSFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIADEDPDESTDKEKKEETSSDIDEKRGQYAKFWNEFGKSIKLGIIEDATNRNRLAKLLRFESTKSEGKLVSLDQYISRMKSGQKDIFYITGTSKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDAKDKELKESFKDLTKWWKTALASENVDDVKISNRLDNTPCVVVTSKFGWSANMERIMQSQTLSDASKQAYMRGKRDESVKQTAQLMYQTALFESGFLLNDPKDFASRIYDSVKSSLDISPEATVEEEDETEVEADSEAKDEATTSKPDADAANDDGKDEFTKSEGKLVSLDQYISRMKSGQKDIFYITGTSKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDAKDKELKESFKDLTKWWKTALASENVDDVKISNRLDNTPCVVVTSKFGWSANMERIMQSQTLSDASKQAYMRGKRDESVKQTAQLMYQTALFESGFLLNDPKDFASRIYDSVKSSLDISPEATVEEEDETEVEADSEAKDEATTSKPDADAANDDGKDEFVATIPRLFIYNYQCLMPQIQL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00118	133625	165075	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006457 protein folding

GO:0006950 response to stress

molecular_function

GO:0005524 ATP binding

GO:0051082 unfolded protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000118s00009652.1	PF13589.1	HATPase_c_3	93	214	2.90E-11
Glyur000118s00009652.1	PF00183.13	HSP90	248	769	9.40E-223
Glyur000118s00009652.1	PF00183.13	HSP90	784	1016	5.60E-88
Glyur000118s00009652.2	PF13589.1	HATPase_c_3	93	214	2.00E-11
Glyur000118s00009652.2	PF00183.13	HSP90	248	769	4.90E-223
Glyur000118s00009652.3	PF13589.1	HATPase_c_3	93	214	2.00E-11
Glyur000118s00009652.3	PF00183.13	HSP90	248	769	4.90E-223
Glyur000118s00009652.4	PF00183.13	HSP90	72	513	4.40E-204
Glyur000118s00009652.4	PF00183.13	HSP90	512	584	2.90E-18
Glyur000118s00009652.4	PF00183.13	HSP90	599	831	4.00E-88
Glyur000118s00009652.5	PF13589.1	HATPase_c_3	93	214	1.90E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.572
SRR1783600	control	16.555
SRR1783602	moderate drought stress	7.895
SRR1811619	moderate drought stress	7.690

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.199
DRR006520	Root Summer glycyrrhizin high producing strain	27.682
DRR006521	Root Winter glycyrrhizin high producing strain	5.535
DRR006522	Root Winter glycyrrhizin high producing strain	5.461
DRR006523	Root Summer glycyrrhizin low producing strain	20.498
DRR006524	Root Summer glycyrrhizin low producing strain	20.640
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.486
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.399

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	54.399
SRR2868004	Drought Stress (root)	29.874
SRR2967015	Control (root)	31.714

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.246
SRR9715740	Leaf	23.264
SRR9715741	Leaf	51.458
SRR9715739	Root	2.245
SRR9715742	Root	17.093
SRR9715743	Root	15.491

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.586
SRR8749028	MeJA induced 9h	26.579
SRR8749029	MeJA induced 9h	19.919
SRR8749030	Uninduced	13.854
SRR8749031	Uninduced	16.020
SRR8749032	Uninduced	15.423

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.426
SRR8400027	Control - Root	33.844