Gene detail information of Glyur000118s00009650 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20080.1 | 0 | Calcium-dependent lipid-binding (CaLB domain) family protein |
| NR | XP_004499288.1 | 0 | PREDICTED: synaptotagmin-2-like [Cicer arietinum] |
| Swissprot | tr|B6ETT4|SYT2_ARATH | 0 | Synaptotagmin-2 |
| trEMBL | tr|I1MY41|I1MY41_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G37850.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00118 | 110840 | 116866 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000118s00009650.1 | PF00168.25 | C2 | 256 | 331 | 4.50E-20 |
| Glyur000118s00009650.1 | PF00168.25 | C2 | 424 | 453 | 0.083 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.609 |
| SRR1783600 | control | 2.656 |
| SRR1783602 | moderate drought stress | 4.126 |
| SRR1811619 | moderate drought stress | 3.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.625 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.695 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 44.110 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 43.889 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.384 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.037 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 58.627 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 58.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.478 |
| SRR2868004 | Drought Stress (root) | 24.085 |
| SRR2967015 | Control (root) | 30.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 55.856 |
| SRR9715740 | Leaf | 63.170 |
| SRR9715741 | Leaf | 41.981 |
| SRR9715739 | Root | 0.732 |
| SRR9715742 | Root | 5.096 |
| SRR9715743 | Root | 6.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.981 |
| SRR8749028 | MeJA induced 9h | 12.078 |
| SRR8749029 | MeJA induced 9h | 6.580 |
| SRR8749030 | Uninduced | 2.829 |
| SRR8749031 | Uninduced | 0.396 |
| SRR8749032 | Uninduced | 0.923 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.595 |
| SRR8400027 | Control - Root | 18.068 |