Gene detail

Gene detail information of Glyur000118s00009643

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75880.2	2.00E-94	SGNH hydrolase-type esterase superfamily protein
NR	XP_003589528.1	1.35E-172	GDSL esterase/lipase [Medicago truncatula]
COG	NP_923900.1	6.00E-12	esterase [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|Q94CH8\|EXL1_ARATH	8.00E-113	GDSL esterase/lipase EXL1 (Precursor)
trEMBL	tr\|G7I7S7\|G7I7S7_MEDTR	5.00E-173	GDSL-like lipase/acylhydrolase {ECO:0000313\|EMBL:AES59779.1}

Sequence

Transcript Sequence

>Glyur000118s00009643.1
GCAATTGGTTGGTGTAAGCNCTGTATCTCGATTAGACGATGATTCCTCTAAACTTGCTCTTTGCTAATTAATATATACAGAGGAGGGAGAAGTATAACCAGTACTACCCAAAAACTGCAGTTAGTTATTCACGCCTTCTTCTATACATACATGGTTCTTTTAATAATGAAGCTCCCTAATTCTTTTCCTCTAGTACCTTTTCTTCTCCGATTGACACAAATATTATTATTAGTATTTGTGTGCTGCTGCAAAACGACGTCGAAGGCTGTTGTGAAACTGCCACCAAATGTTTCGATTCCAGCAGTGTTGGTGTTTGGAGATTCCATCATGGACACGGGCAACAACAACAACATGGAAACACCATCACGGTGCAATTACAAACCATATGGGAAAGATTTTCAGGGTGGGATCCCAACTGGCCGATTCAGCAATGGAAAGGTCCCATCAGACCTCGCAGTTGAAGTATTAGGCATTAAAGAGTTTCTACCAGCATACTTGGATCCAAATCTCCAGCCAAGTGAATTGGCCACCGGGTGTGTGCTTTGCATCTGGTGGCTCTGGATACGATTCCCTGACACCAAAATTAGAGCTATACCTTTATCCGGCCAGCGAGACCTATTCAAAGAATATATTGGGAGGCTAAAGGGACTTGTTGGAGAGGACAGAACAAACTTCATCTTAGCCAACAGTCTTTTTCTTGTGGTATTAGGCAGCAATGACATTTCCAACACTTACTTCTTGTCTCGTGCGAGGCAAGAAATATATCAACTTGGTGCACGGAGGATTGGAGTATTCAGTGTGCCACCAATTGGGTGTGTGCCGTTTCAGAGGACAATGGCCGGAGGAATACGAAGAAAATGTGTGAAACATTACAACGATGCGGTAGTGTTGTTTAANAACAAGCTGAAGAAGGAGATCGATTCCTTTAAGCAAAACTTTCCAAATAGCAGGATAGTTTACTTGGATGTTTACAACCCTCTGCTCGATATAATTATAAACAACCAAGAATATGGCTATAAAGTTGGAGACAGAGGGTGTTGTGGCACAGGCAAAATAGAGGTTACGTTTTTATGCAACCATTTGGCTCCTATGTGTCCCAACGATTTGGATTATGTGTTTTGGGACAGTTTTCATCCCACTGAGGCCGTTTACAGAAACCTTGTTGCCCCAATTATGCAAAAATATATAGACCAGTTCGTAGGCTGTTATGAAGCTGCAACCAAATGTTTCGATTCCAGCGCTCTTGGTATTTGGATTGGAGATTCAATTGTGGATACGGGCAACATAAAAACATCGCTTCGAAGCAATTTCCCTCCATATGGGAAAGATTTTGAGGGAGGGATCCCAACTGGCAGATTTAGCAATGGAAAGGTATATATATACTTATCCCAATTTTGCTTCCTTAAAAAAATCTTTAATTTAAGAAAAACATCAGTATCTTATAAGAAGATAATAGGTTTAAATATGTTTTTTTATACAACAAAATTTCGATTATACCTCTATGTCAGGTCAACTAGATTATTCAAATATTACATAGGGAAGCTAAGAGGACTCGCTGGAGAGAACAGAACAAACTTCATCCTGTACGCCACCAGTTGGGTGTTTGCCATTCCAGAGAACAATGGCTGGAGGAATAGCAAGAGAATGTGTGGAACAATACAACGATGCAGCAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00118	52694	76156	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

molecular_function

GO:0016298 lipase activity

GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000118s00009643.1	PF00657.17	Lipase_GDSL	52	338	1.50E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.005
SRR1783602	moderate drought stress	0.077
SRR1811619	moderate drought stress	0.068

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.092
DRR006520	Root Summer glycyrrhizin high producing strain	0.072
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.957
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.624

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.050
SRR2868004	Drought Stress (root)	0.029
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.857
SRR9715740	Leaf	0.520
SRR9715741	Leaf	1.332
SRR9715739	Root	0.000
SRR9715742	Root	0.681
SRR9715743	Root	1.103

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.143
SRR8749029	MeJA induced 9h	0.044
SRR8749030	Uninduced	0.193
SRR8749031	Uninduced	0.024
SRR8749032	Uninduced	0.073

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.056
SRR8400027	Control - Root	0.474