Gene detail

Gene detail information of Glyur000117s00007682

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G48270.1	2.00E-134	cytochrome P450, family 71, subfamily A, polypeptide 26
NR	KEH31104.1	0	cytochrome P450 family 71 protein [Medicago truncatula]
COG	NP_241445.1	7.00E-36	cytochrome P450 hydroxylase [Bacillus halodurans C-125]
Swissprot	tr\|O04164\|C71A6_NEPRA	2.00E-174	Cytochrome P450 71A6 (Fragment)
trEMBL	tr\|A0A072UMT0\|A0A072UMT0_MEDTR	0	Cytochrome P450 family 71 protein {ECO:0000313\|EMBL:KEH31104.1}

Sequence

Transcript Sequence

>Glyur000117s00007682.1
ATGGAGGAGGAGGAGGAGGAAATCTCTGTGTGTTTCAATCAAATACCTGTCCAGTCTCATTTTGTACGGCTTCATCTTTCCTCTTCTTCCTTTAAGGAAATAATCCTTGTCCTGTCCGGTAGGAGGAAAACAGAAACTCATCCACTTTTCTGCCAACTTCTTCTATTCCACAGGAAAACTTCCATTATGCTTTTCTTCACCNTCTTTCCACTCTTCCTTTCCTTTCTCTTCATCTTCATCAAATGGTATTCGAAATCTTCTACTTCCAAAAACTCACCCCCTTCACCTCCAAGAATTCCTCTGCTTGGTAACCTCCATCAACTTGGCATGTTCCCTCACCGCACACTCCAAGCTTTGGCTCAAAAGTATGGACCTTTAATGTTGCTTCATCTTGGGAGAGTGCCAGTGCTTGTGGTTTCCTCTGCTGAAGCAGCAAGTAAGGTAATGAAAACCCATGACTTGGTTTTCTCTGATAGGCCACATCGTAAAGCATTTGATATCTTGTTGTATAGTTCTAAAGATGTGGCAAGTACTGCATATGGTGAGTATTGGAGGCAAATAAGGAGTCTCTCTGTGTTACACCTTTTAAGCAACAAAAGGGTTCAATCCTATCGTTGTGTTAGGGAGGAAGAAACTGCAAGAATGATGGAACGTATTAAGGAGTTTTCTTGTTCTTCTTCTTCTAAATCATTGCCTCTGAATTTATCTGAGTTGTGCTCTACGGTTACTAATGATATAGTGTGTAGGGTGGCTTTGGGAAAGAGATACCGTGAAGAAGGAGGGAGGAAGTTTCAGAAGTTGTTGTTGGAGTTTGGGGAGTTACTGGGTACTGTTTGTATAGGGGACTATATACCTTGGCTTGATTGGTTGAGTAAGGTTAATGGTTTCTATGGCAGAGCAGAAAGAGTTGCCAAACAATTGGATGAGTTTATAGATGGAGTAATTGAGGAGCACATTAGTTGTGGGTCGAAGAATAGCAGTGATGGACATGTTGGTGTGGACAGTGATGAGGACCGGATTGATTTTGTGGATGTTTTGCTTTCGGTTCAAGAGACCAATGCTATTGGCTTCCCAATTGATAGAACTGCAATGAAGGCTTTGATACNGGACATGTTTGCTGCAGGCACAGACACTACCTACACAGTGATAGAGTGGGCAATGGCAGAACTGTTAAAGAACCCAACTGTGATGCATAAATTGCAAGCTGAGGTGAGAAGTGTGGTTGGTAACAGAAATGATCATGTAACCGAGGAGGATTTGTGTCAAATGAACTACTTGAAGGCTGTGATTAAAGAAACTCTTCGACTCCATGCCCCAATTCCCTTATTAATTCCTCGGAGATGCATGAAAGATATCAAACTGGATGGCTATGACATTGCAGCTGGCACACAGGTAATAGTGAATGCTTGGGGAATTGGAAGAGATGCTTCATGTTGGGACCAACCTCTAGAGTTCAAACCAGAAAGGTTCCTCAACAGTTCAATAGATTTCAAAGGACNTGATTTTGAACTTATCCCATTTGGAGCAGGAAGGAGGGGTTGTCCTGGGGTGCTGTTTGCAANTGCTGTGAATGAGTTGGTGCTAGCAAACCTTGTCAACCAATTTGATTGGAAATTGCCTGATGGAGTAACAGAGAAGGACTTGGACATGTCTGAAACTAATGGTGTTTCCTGTCATAAAAAATATCCTCTCTTTGTAGTAGTTACCAAATATGAGAGGAATGAATAAACAACCACCGGGCAACAAAAAAATCATAATGTGTTCTGAACATTTCAGTTCAAATGTTTCAAATGTGTTCTGTTCAATTATAATGTGCAAGTGTTATCCAAACTCTACACTCATGTTATTTGTATTCAAATCTTGTTTGAAAAAAATAAATATGTTTCTAAAAGTAAATCATTCCAGCTATGTCTAATATTTGGCAAACTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00117	334503	337511	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP71A26

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000117s00007682.1	PF00067.17	p450	93	560	1.40E-106

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.213
SRR1783600	control	1.239
SRR1783602	moderate drought stress	9.064
SRR1811619	moderate drought stress	9.061

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.260
DRR006520	Root Summer glycyrrhizin high producing strain	4.341
DRR006521	Root Winter glycyrrhizin high producing strain	2.877
DRR006522	Root Winter glycyrrhizin high producing strain	3.044
DRR006523	Root Summer glycyrrhizin low producing strain	5.337
DRR006524	Root Summer glycyrrhizin low producing strain	5.367
DRR006525	Leaf Summer glycyrrhizin high producing strain	80.414
DRR006526	Leaf Summer glycyrrhizin high producing strain	79.935

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.261
SRR2868004	Drought Stress (root)	4.195
SRR2967015	Control (root)	2.864

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	77.048
SRR9715740	Leaf	146.666
SRR9715741	Leaf	76.450
SRR9715739	Root	5.877
SRR9715742	Root	5.030
SRR9715743	Root	4.939

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.137
SRR8749028	MeJA induced 9h	3.030
SRR8749029	MeJA induced 9h	2.794
SRR8749030	Uninduced	3.453
SRR8749031	Uninduced	2.784
SRR8749032	Uninduced	2.872

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.442
SRR8400027	Control - Root	8.106