Gene detail information of Glyur000117s00007676 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14770.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004505033.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g14770, mitochondrial-like [Cicer arietinum] |
| Swissprot | tr|Q9LER0|PP381_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g14770, mitochondrial (Precursor) |
| trEMBL | tr|G7ZZ81|G7ZZ81_MEDTR | 0 | Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:AES84519.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00117 | 296192 | 300716 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000117s00007676.1 | PF12854.2 | PPR_1 | 130 | 156 | 6.10E-06 |
| Glyur000117s00007676.1 | PF13041.1 | PPR_2 | 167 | 215 | 5.30E-12 |
| Glyur000117s00007676.1 | PF01535.15 | PPR | 242 | 262 | 0.021 |
| Glyur000117s00007676.1 | PF12854.2 | PPR_1 | 268 | 298 | 1.20E-09 |
| Glyur000117s00007676.1 | PF13041.1 | PPR_2 | 329 | 376 | 3.20E-11 |
| Glyur000117s00007676.1 | PF13041.1 | PPR_2 | 397 | 444 | 7.10E-09 |
| Glyur000117s00007676.1 | PF13041.1 | PPR_2 | 467 | 516 | 3.50E-14 |
| Glyur000117s00007676.1 | PF13812.1 | PPR_3 | 540 | 571 | 0.42 |
| Glyur000117s00007676.1 | PF01535.15 | PPR | 576 | 605 | 0.048 |
| Glyur000117s00007676.1 | PF13041.1 | PPR_2 | 607 | 654 | 3.70E-10 |
| Glyur000117s00007676.1 | PF13041.1 | PPR_2 | 676 | 725 | 1.80E-19 |
| Glyur000117s00007676.1 | PF01535.15 | PPR | 785 | 814 | 2.10E-06 |
| Glyur000117s00007676.1 | PF13041.1 | PPR_2 | 817 | 864 | 1.90E-13 |
| Glyur000117s00007676.1 | PF12854.2 | PPR_1 | 882 | 914 | 1.10E-05 |
| Glyur000117s00007676.1 | PF13041.1 | PPR_2 | 921 | 970 | 1.90E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.146 |
| SRR1783600 | control | 2.111 |
| SRR1783602 | moderate drought stress | 2.795 |
| SRR1811619 | moderate drought stress | 2.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.821 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.896 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.388 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.316 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.292 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.312 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.109 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.330 |
| SRR2868004 | Drought Stress (root) | 4.015 |
| SRR2967015 | Control (root) | 4.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.544 |
| SRR9715740 | Leaf | 1.949 |
| SRR9715741 | Leaf | 2.103 |
| SRR9715739 | Root | 0.043 |
| SRR9715742 | Root | 1.103 |
| SRR9715743 | Root | 1.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.672 |
| SRR8749028 | MeJA induced 9h | 2.565 |
| SRR8749029 | MeJA induced 9h | 1.712 |
| SRR8749030 | Uninduced | 0.905 |
| SRR8749031 | Uninduced | 0.818 |
| SRR8749032 | Uninduced | 0.415 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.238 |
| SRR8400027 | Control - Root | 3.912 |