Gene detail information of Glyur000117s00007668 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27450.1 | 8.00E-78 | Aluminium induced protein with YGL and LRDR motifs |
| NR | XP_006583815.1 | 6.95E-155 | PREDICTED: uncharacterized protein LOC100776430 isoform X2 [Glycine max] |
| COG | YP_004786981.1 | 3.00E-07 | asparagine synthase [Muricauda ruestringensis DSM 13258] |
| Swissprot | tr|P24805|TSJT1_TOBAC | 3.00E-31 | Stem-specific protein TSJT1 |
| trEMBL | tr|G7ZZ88|G7ZZ88_MEDTR | 3.00E-150 | Stem-specific protein TSJT1 {ECO:0000313|EMBL:AES84526.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00117 | 257330 | 259120 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000117s00007668.1 | PF12481.3 | DUF3700 | 66 | 290 | 2.70E-98 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.320 |
| SRR1783600 | control | 0.207 |
| SRR1783602 | moderate drought stress | 0.320 |
| SRR1811619 | moderate drought stress | 0.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.486 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.589 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.106 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.138 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.334 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.235 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.628 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.778 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.842 |
| SRR2868004 | Drought Stress (root) | 5.833 |
| SRR2967015 | Control (root) | 7.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.144 |
| SRR9715740 | Leaf | 3.288 |
| SRR9715741 | Leaf | 3.333 |
| SRR9715739 | Root | 0.109 |
| SRR9715742 | Root | 0.969 |
| SRR9715743 | Root | 0.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.179 |
| SRR8749028 | MeJA induced 9h | 28.000 |
| SRR8749029 | MeJA induced 9h | 20.432 |
| SRR8749030 | Uninduced | 16.101 |
| SRR8749031 | Uninduced | 118.681 |
| SRR8749032 | Uninduced | 134.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.185 |
| SRR8400027 | Control - Root | 3.151 |