Gene detail

Gene detail information of Glyur000117s00007649.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G17420.1	lipoxygenase 3
NR	XP_003528455.2	PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic-like [Glycine max]
Swissprot	tr\|O24371\|LOX31_SOLTU	Linoleate 13S-lipoxygenase 3-1, chloroplastic (Precursor)
trEMBL	tr\|I1KLK0\|I1KLK0_SOYBN	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur000117s00007649.1
GCCTATCTACCTGGTGAGACACCAATTGGGGTGAAAGAACTGAGAGAAAGGGAGCTGAGGCAGCTGAGAGGTGATGGCAAGGGACGCAGCAGGATATATGACTACGATGTGTACAATGATTTGGGTGATCCAGACAAGGGAGATGAGCATGCACGGCCAACTCTTGATACGAAGGCGGAGTCACGGCCGGGTGAATCAGAGTCCATATACGTGCCTAGGGATGAAGAATTGGAGGACATAAAGCGAGAAGCTATTGATCAGGGAAAATTGATGGGACTGCTTCGTAATGTTGTGCCAGCTTTAATGGACAACATCATGGGCAGTGGAGGAGGAGTTTTAGACATTGATCACTTCATTAAAGAGACAGGGAACTCTGAACCACCCAACAAGTCTCAGGTTGGTCTAGGTGAACCATGGACTGTTCTGCTCAATTTGGGAGGTTCCATAGAAGAATTTTTTAAATTTGATCCTCCAAAGATATTCTCAAGGGGGAAATCACATTTCTTNCTTGATGATGAGTTTGGACGTCAAGTGCTAGCTGGGTTAAACCCTTTAAGTATTGAAAGGCTAAAGGTTTTCCCACCTGTGAGCAAACTGGATCCCTCTATATATGGTTCAGTAGAGTCAGCATTGAAAGAACAACACATTATAGGCCACATTNAAGGGATGTCTATCCAACAGGCACTGGAAGAGAACAAGTTGTTCGTACTGGACTACCACGATGTTTATCTGCCATTCCTGGATGGGATTAATGCTCTTGATGGGCGCAAGGCTTATGCAACAACCACCATTTTCTTCCTCACCAAAATGGGAACTCTAAAGCCCATTGCCATCCAGCTTGCTGGGGATCCAAACACTTCATCCAAGCGGGTTCTCACCCCTCCTGTAGATGATGACACCTCCAAATGGCTCTGGCAACTTGCCAAAGCCCATGTTTGCTCTAATGATGCTGGCGTTCATACCCTTGTGCACCACTGGTTACGAATACATGCATGCATGGAACCACTGATTATTGCTGCTCATCGGCATTTAAGTGTGATGCATCCTATATACAAGCTTCTGCAACCCCATATGCGATACACACTCAAGACAAATGCAACAGCCCGTGAGGTACTAATCAATGCCGAAGGTGCCATTGAGACAAACTACACTCCCGGGAGATACTGTCTGCAAATCGCTTGTGCTGCCTATAAACACTGGTGGCGGTTTGACATGGAAGCCCTTCCTGCCGATCTTATAAGAAGAGGTTTAGCAGTTCCGGATAAAACTCAGCCGCACGGAATTAGACTACTTATTGAAGACTATCCTTATGCAGCAGATGGACTCCTCATATGGTCAAGTATAGAGAAGTTGGTTCGGACCTATGTGAACCATTACTACAAAGGTACTTCAAATGCCATTTCCACTGACAATGAACTCCAATCCTGGTACAAAGAATTCATCAATCTCGGACACCCTGACCACAAAGATGCTAGCTGGTGGCCAAAACTTGCCACCCCTGAGGATCTCATCTCCTTGCTTACCACTATTATCTGGATTGTAACAGCACAGCATGCTGTCTTGAACTTTAGTCAATACCCCTATGGCGGGTATGTTCCGATCCGTCCACCATTGATGCGAAAACTAATTCCCAATGAGGAGGATTCTGGTTCTGGCTACTCAGATTTTGTCAAGGATCCACAGGGATACTTCCTATCATCAATGCCAGGTTTATTTCAGGCAACAAGGTTCATGGCTGTGATCAACATAGGTTCTGCACACTCGCCTGATGAGGAATATATAGGAGATAGAAATGACGTGTGTTCTTGGTTGGGAGAACCTGAGGTCATTGATGCATTCGACCGATTTTCAATGGAGATGAAAGATATTGAGATGGAGATTGAGAGGAGAAACACTGATCCAAGACTTAGGAATAGATGTGGCCTTGGAGTTTCACCATATGAACTGCTTATACCAAGCTCAGGATGTGGAGCCACTGGACGAGGGGTGCCAAATAGTGTAACAGCCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00117	186505	189467	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00454	LOX2S	EC:1.13.11.12	Linoleic acid metabolism	map00591
			alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000117s00007649.1	PF00305.14	Lipoxygenase	12	653	2.20E-197

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.019
SRR1811619	moderate drought stress	0.019

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.182
DRR006522	Root Winter glycyrrhizin high producing strain	0.216
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.138
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.109

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.585
SRR2868004	Drought Stress (root)	0.636
SRR2967015	Control (root)	0.220

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.056
SRR9715740	Leaf	0.188
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.065
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.371
SRR8749028	MeJA induced 9h	0.752
SRR8749029	MeJA induced 9h	0.306
SRR8749030	Uninduced	8.369
SRR8749031	Uninduced	3.167
SRR8749032	Uninduced	12.842

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.787
SRR8400027	Control - Root	0.073