Gene detail information of Glyur000117s00007647.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G28240.1 | 0 | Protein of unknown function (DUF616) |
| NR | XP_006583820.1 | 0 | PREDICTED: uncharacterized protein LOC100783387 isoform X2 [Glycine max] |
| COG | YP_721969.1 | 2.00E-06 | glycosyl transferase family protein [Trichodesmium erythraeum IMS101] |
| trEMBL | tr|I1KLK3|I1KLK3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G31680.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00117 | 176780 | 182050 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000117s00007647.1 | PF04765.8 | DUF616 | 192 | 505 | 3.60E-134 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.633 |
| SRR1783600 | control | 13.600 |
| SRR1783602 | moderate drought stress | 10.606 |
| SRR1811619 | moderate drought stress | 10.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.072 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.823 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.984 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.802 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.245 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.350 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.151 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.913 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.492 |
| SRR2868004 | Drought Stress (root) | 18.016 |
| SRR2967015 | Control (root) | 18.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.479 |
| SRR9715740 | Leaf | 14.004 |
| SRR9715741 | Leaf | 16.158 |
| SRR9715739 | Root | 4.996 |
| SRR9715742 | Root | 13.626 |
| SRR9715743 | Root | 11.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.757 |
| SRR8749028 | MeJA induced 9h | 26.196 |
| SRR8749029 | MeJA induced 9h | 24.265 |
| SRR8749030 | Uninduced | 10.075 |
| SRR8749031 | Uninduced | 6.899 |
| SRR8749032 | Uninduced | 11.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.152 |
| SRR8400027 | Control - Root | 21.983 |