Gene detail

Gene detail information of Glyur000117s00007645

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32480.1	2.00E-60	Protein of unknown function (DUF506)
NR	XP_004505065.1	6.78E-146	PREDICTED: uncharacterized protein LOC101509007 [Cicer arietinum]
trEMBL	tr\|A0A072UMP5\|A0A072UMP5_MEDTR	3.00E-142	Plant/F8B4-180 protein {ECO:0000313\|EMBL:KEH31059.1}

Sequence

Transcript Sequence

>Glyur000117s00007645.1
AACTAGAAAATAATTGCAACCGAATGACGTGGATCCATGCTGTATATATGAAACCCCGAAACTAAATATATCCACACTCCGATCTCAATCAACCAATAGGACCCTGCCACACACATGTGCGCGGCGATTAGAGATTGTCCCACACCATTCGAGTTTTTCGTATAAAAAGCCTTCCATCATTCCACACATACATAATAACACGATCCAATTCCACACCCACACACACATTCACCATCCTTAATTCTCTTACCTATAGAGTCAAACAATAAAGACCAAGTTAATTAACCTTAATTAACAACACCATGGGTATGGGTACAACTTCTGTGTCCCGAGGAGGAGGAATCACCAGATTTTTGCCCAGTTTCCACGGGGAATATTCGAGGCACGAAAGTCTCAACTATGCGTCGTGTGCACAACAATCTGCAGACGCCAGTCTCGCCGATGTGGAACTTGAATTCCTTGATCATATTGATGGTGACACGTTAATAGGTCAAAGCGAAAATAGCCAGGAGTTTCATCCAAATGAAATGGAGTTAGATCATGAAGATGAATGCGAGGAGTTCAACAATATTGGTGGCAACGAGGAGAATAAAAACTTTTGGGACAACCAACTCCAGATTTTGCAGACCAACCTATACAGAACGAGTTCGTTGGAGTCAAGGATAAGGAAAGCCACGAAAGAAGCGGTTCAGGATATACATAACGCAGAAATAGAGTGCAGTTGCAGTACTAGACAGATGGCTGCTGCCAGCTCCTGTCGAAACTGTTTGATGAGAGAAGTCTCTAGGCGGCTTCAGAACGCTGGTTTTAACAGCGCAATTTGCAAAACCAAATGGAAAAGCTCACCAACTATTCCATCTGGGGAGCATACTTTTCTGGATGTGATAGAGAGTTCAAGCAAAGAGAAAGGATCAGGTGTAAGGGTGATCATAGAACTGAACTTCAGAGCAGAGTTTGAGATGGCGAAGGCAAGCGAGGAGTATAACCGGCTTGTGAGGAGGCTACCGGAGGTGTATGTGGGGAAAGTGGAGAGAATGAGCAACATAATCAAGGTGTTGTGCATGGCAGGCAAAAGGTGCATGAAGGAAAATAAGATGCANATGGGACCATGGAGAAAACACAAGTACATGCAAGCCAAGTGGTTGGGTCCATGTAAAAGGAACACTTCAACAACTTCCCTTTCAATGGGATATTCTGATGAGATGAGGATATTGCCAAAGCCGAAGACAAAGGCATCAATGTTAACAGTAGATCTGCTAGAGAAGCTTCCCAATATGCACCCTGTTGCAGTTGTGTAAATTTATTTTTTTTTGGTAAACTGAAGTTGTGTAATTTAAGACAGAGAAGCGTGGTTTTTTTTTTTTATAGTGAGAAAGGAGTGAATCAAATATCCTTACATATATATGTGGAAAATAAAAAAAATTATAGCACAATACGTACGTATGCACTTCAAAGCTGCGCGCCCTGAGTTTCCAAGGTCAATCTAAGACATGCCTATTTTTGTTGATTGATATGTTGCTTTACATATGTACTGGCCTTGGGTGAAAACAATAAAGAAGGATTTAATATGCGGACAAAATAGTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00117	160422	163060	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000117s00007645.1	PF04720.7	DUF506	75	286	1.10E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.464
SRR1783600	control	18.635
SRR1783602	moderate drought stress	21.696
SRR1811619	moderate drought stress	21.552

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	87.929
DRR006520	Root Summer glycyrrhizin high producing strain	88.618
DRR006521	Root Winter glycyrrhizin high producing strain	206.021
DRR006522	Root Winter glycyrrhizin high producing strain	201.041
DRR006523	Root Summer glycyrrhizin low producing strain	17.364
DRR006524	Root Summer glycyrrhizin low producing strain	17.380
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.117
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.114

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.461
SRR2868004	Drought Stress (root)	22.292
SRR2967015	Control (root)	41.085

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.685
SRR9715740	Leaf	4.615
SRR9715741	Leaf	5.237
SRR9715739	Root	1.202
SRR9715742	Root	3.613
SRR9715743	Root	3.416

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.100
SRR8749028	MeJA induced 9h	30.059
SRR8749029	MeJA induced 9h	21.834
SRR8749030	Uninduced	9.973
SRR8749031	Uninduced	100.600
SRR8749032	Uninduced	89.131

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.858
SRR8400027	Control - Root	0.455