Gene detail

Gene detail information of Glyur000117s00007634.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32551.1	3.00E-69	LisH dimerisation motif;WD40/YVTN repeat-like-containing domain
NR	XP_006594588.1	6.38E-86	PREDICTED: transcriptional corepressor LEUNIG-like isoform X6 [Glycine max]
COG	YP_003298055.1	2.00E-21	serine/threonine protein kinase with WD40 repeats [Thermomonospora curvata DSM 43183]
Swissprot	tr\|Q9FUY2\|LEUNG_ARATH	9.00E-78	Transcriptional corepressor LEUNIG
trEMBL	tr\|B9RBC4\|B9RBC4_RICCO	6.00E-86	WD-repeat protein, putative {ECO:0000313\|EMBL:EEF50845.1}

Sequence

Transcript Sequence

>Glyur000117s00007634.1
ATGAAAACACAAGCTCTGGATCTGGAAGCACTTGTTCCTCAATCAATTGGAGATTGCACAGCAAGGCAAATATTGATGGAAACTAGATATGGCCATTTCAGTCATGAAATAGAGAAGAGAATGTTGGCAGTTGTATTTATGGAATGTTTGTTTCAATTTCGAACACCAGGTTTTTCAAGCAAAGACGAGTTTGTGTCCTGCCATATTTCATCAAATGGAAAGATTTTGGCAAGTGCTGGAGCTGGGCTTGATCAGAAGGTTTTCTTATACAACTTGGAAACTTCTTATCTGTTCACTACATCAGAGGGACATTCAAAACTCATCGCAGATGTTCGATTTAAACCAGATTCAACTACTTTTGCAACAGCTTCCTTTGATGGAACCGTAAAAATATGGGATGCGAACAGACCTTCCAAATCGTTGTTCCATCTTACTAGGCGCAATAATGTACAAGTCATGTCAGTGGACTTCCACCCCACGGTAGCGGACATTCTCTGCTCCAGTGATAGTNATGGTGTAATTGCAATTTGGGATGTCAATCAGCGTGTCATGCTGAAACACTTTAAGGGAGGTAGAAGTCACGTTAGATTCCAGCCTAGATTTGGGAGGTTTTTAGCTACTGTCACATCAAGTCCAACTTATATCAACATAATTGATACGCAGAACTGGTCTATTGTGGACAGTCTAAAGGTCAGCCTCGAGGGGAGCCATGCCGACCGNATTAACTCCATTTGTTGGGACACAAACGGAAGCTTTCTTGCCTCTGTCAGTTACGATTTCGCATGTGTCTGGTCCATTGCGTTTGGTCAAATTACATGCATTCATGAATTGCCTTCGAAAGGGAAGAGGTTTCAATCGTGCATATTCCATCCCTTGTATCCTAACGTCTTAGTTATTGGATGCAGAAAGAGCCTGGAATTTTGGATTCCTGAGACCGGACAAAGANGTACAATTCCTGCCCACAATGGATTAATTACTGGACTAGCAGGTTCAACGCAGTATGGATTGTTTGCCTCAGCTAGCGCTGATAAACACGTGGAACTATGGAAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00117	100454	102391	-

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000117s00007634.1	PF00400.27	WD40	99	133	4.30E-09
Glyur000117s00007634.1	PF00400.27	WD40	236	259	0.0032
Glyur000117s00007634.1	PF00400.27	WD40	317	350	0.002

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.192
SRR1783600	control	0.185
SRR1783602	moderate drought stress	0.105
SRR1811619	moderate drought stress	0.191

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.168
DRR006520	Root Summer glycyrrhizin high producing strain	0.244
DRR006521	Root Winter glycyrrhizin high producing strain	0.831
DRR006522	Root Winter glycyrrhizin high producing strain	0.769
DRR006523	Root Summer glycyrrhizin low producing strain	0.210
DRR006524	Root Summer glycyrrhizin low producing strain	0.257
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.768
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.638

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.298
SRR2868004	Drought Stress (root)	0.284
SRR2967015	Control (root)	0.257

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.171
SRR9715740	Leaf	0.081
SRR9715741	Leaf	0.065
SRR9715739	Root	0.387
SRR9715742	Root	0.436
SRR9715743	Root	0.339

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.043
SRR8749028	MeJA induced 9h	0.628
SRR8749029	MeJA induced 9h	0.498
SRR8749030	Uninduced	0.569
SRR8749031	Uninduced	0.321
SRR8749032	Uninduced	0.254

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.771
SRR8400027	Control - Root	0.821