Gene detail

Gene detail information of Glyur000117s00007633

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G33800.1	2.00E-78	Ribosomal protein S5 family protein
NR	XP_003542738.1	3.62E-158	PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Glycine max]
COG	YP_007169484.1	3.00E-62	30S ribosomal protein S5 [Halothece sp. PCC 7418]
Swissprot	tr\|Q9ST69\|RR5_SPIOL	9.00E-141	30S ribosomal protein S5, chloroplastic (Precursor)
trEMBL	tr\|I1M091\|I1M091_SOYBN	1.00E-158	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G24640.1}

Sequence

Transcript Sequence

>Glyur000117s00007633.1
CCTTAACGTCATCGACAGTCNACACCCTTTGGTGAGCGCTCAGCAGTTAAAGATAGCACCACAGTGAGCGAGCCAAAGCCATCGTCGTGGGTATTGAGGATAAGCCTTCCTCCAAAGTTCAATTTCAATGGCTGCGGCTTCAGCATCAGCANCAGCNCTCAATTCCCTCTCCTCTCTCNCTCTCCGTGCCTCTTCTTCCTCTTGCTTCTCTCTCCTCCCTCCAACCACCAAACTCACATTCCCTCTCCTCCTCACAACCAAAACCCCACCACTCTCCTCCACCCCAGCCTCCACTCTCTCCGTCGCCAGAGCCAAACCCTCCGAAGAAATCGACACCTTCTCCTTCGACAACCCGGAAGAAGAGCTTCCCTTCAACCCACCCGAAATCCCAGAGGGCTTCGTGGCCCCACCTTCCATCGACGAAGGCCCCCTCGAGACGGAGGATGAAATCGCCGCCGCATACGAGGAGCTGTACGGCCCCGCGTACAGCGGCGTCACGGTGCTGGGAAACGACATATACGTGATGGACTCCGGCGTGAAGAAGGACACTGGGTTCGGGTCGGGTGTGAAGAAGGAGAAGATCAGGGACGGTTTTGAGGAGAGGGTGGTTCAGGTTAGGAGGGTTACCAAGGTGGTTAAGGGAGGGAAGCAATTGCGGTTCNGGGCGGTGGTGGTTGTCGGGGACAAGAAGGGACAGGTCGGTGTTGGGGTCGGCAAGGCCAAGGAAGTTATAGCTGCGGTTCAGAAATCTGCTGTCAATGCAAGGAGGAATGTTGTTACCGTCCCTATGACCAAGTACTTGACTTTCCCACACAGATCTGAAGGTGATTATGGAGCAGCGAAGGTGATGCTTAGACCTGCTTCTCCTGGTACCGGAGTTATTGCAGGTGGGGCTGTGAGAATTGTTCTTGAAATGGCAGGGGTTGAGAATGCTTTGGGAAAGCAATTAGGAAGTAACAATGCAATCAACAATGCCAGAGCAACTATTGTTGCTGTGCAGAAAATGAGGCAGTTCCGTGAGGTTGCTGAGGAGCGTGGGATCCCAATGGAAGAGTTATGGAAGTAATGAAATTTGTGAAGCCANTGTGATTTTTATACGTCAATCATTGTGATTTAGAACTGGTCNTAGTACCTCTCTTGGTAAGGAAGTGAAACGGTGTTCCATTTTTGTTGAAAGTTTCCTGGAAGTAAACATTCTCTTCAAAATGCTGCTTGTTCAACCTGAATCATATTCTTCACCTGCCTGTTTGATTTGTATTTATGGATGATTGTCCAATTTATGCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00117	97186	99639	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005840 ribosome

GO:0015935 small ribosomal subunit

molecular_function

GO:0003723 RNA binding

GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000117s00007633.1	PF00333.15	Ribosomal_S5	156	220	1.00E-24
Glyur000117s00007633.1	PF03719.10	Ribosomal_S5_C	232	304	1.20E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.640
SRR1783600	control	40.805
SRR1783602	moderate drought stress	27.280
SRR1811619	moderate drought stress	27.094

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.553
DRR006520	Root Summer glycyrrhizin high producing strain	36.313
DRR006521	Root Winter glycyrrhizin high producing strain	20.640
DRR006522	Root Winter glycyrrhizin high producing strain	19.721
DRR006523	Root Summer glycyrrhizin low producing strain	28.064
DRR006524	Root Summer glycyrrhizin low producing strain	28.365
DRR006525	Leaf Summer glycyrrhizin high producing strain	280.885
DRR006526	Leaf Summer glycyrrhizin high producing strain	279.776

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	48.972
SRR2868004	Drought Stress (root)	45.281
SRR2967015	Control (root)	49.022

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	184.514
SRR9715740	Leaf	239.960
SRR9715741	Leaf	136.782
SRR9715739	Root	43.108
SRR9715742	Root	34.564
SRR9715743	Root	34.588

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.931
SRR8749028	MeJA induced 9h	12.724
SRR8749029	MeJA induced 9h	14.438
SRR8749030	Uninduced	8.617
SRR8749031	Uninduced	4.884
SRR8749032	Uninduced	6.734

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	50.635
SRR8400027	Control - Root	53.777