Gene detail

Gene detail information of Glyur000117s00007629.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60200.1	2.00E-29	TARGET OF MONOPTEROS 6
NR	XP_004505077.1	5.02E-109	PREDICTED: dof zinc finger protein DOF1.4-like [Cicer arietinum]
Swissprot	tr\|Q9FZA4\|DOF14_ARATH	2.00E-34	Dof zinc finger protein DOF1.4
trEMBL	tr\|V7BQA0\|V7BQA0_PHAVU	8.00E-99	Uncharacterized protein {ECO:0000313\|EMBL:ESW20139.1}

Sequence

Transcript Sequence

>Glyur000117s00007629.1
CTCTGTTTATCCACAACACATACCACTACGGCCTGTACCCTGCAATTAACCATTCCAATTGCCCATATATCAAGCGCGACTCAAGGCACCAACTGCTCTTTCCTCGTTTCAAGTTCAACAACCCAATATTATTGTAGCTAGGTAGAGAAGAGAGAGCAAAATGTTGGGATATAACTGTGAGAAAACGGTAATCACGCCTCCAACAACAACAACAGCGTCCAACAAATGGACGACACAGATAGATGATAATAATAAGGTGATTTCGATGGCTTCCTCTGGTGGTGGTATGGTAATGGAGAAACCAGGGCAAGAGCTTGTGCAGCAGCAACAAGTAGCGTTGAGGTGTCCTCGTTGCGACTCATCAAACACAAAGTTCTGTTACTACAACAACTACAGCCTGTCACAGCCGAGGCACTTTTGCAAAGCCTGCAAGCGATACTGGACNCGAGGTGGGACTCTGAGGAACGTTCCCGTTGGTGGTGGCTGCAGAAAAAACAAGCGTACTAGTGTCAAAAGACCAACTACTACTACTACTACTACCTCTTCCAACAACATTATCGATACTACTACCACTACTACTAGTGCTAGTGCTAGTGCTGCTGCTTCTCCTTCTTCCACCACTCCTAATTCCCAACCCCACATCGATAACCANCACCACCCTTTGCTTTATGGGTTACCCGGTGGTGGTGATGTCATGAATCTTCTTCCGTTTCCAAGGTTCAATTCTAGAGTCTCATCATCATCCTATGATCTTGATCAGCCTCAGCTTAATGCACTTGGATTAGGCTTTTCATCTGGGATACTGTCTAGTCNTGAAGTCAATGATGATGATGGTTACAGAAACGGGTTATTTAGTTCAAATAATTACAACACGCTTCTTTCTAGTTACGGTTCCATCTTTGGTTCTTNTAATAATTCAACTACTACTTCCATGCCCTCCACTCCAGTTATGGCTTCCCTGCTTAGCTCTACTCTGCTTCAACAAAAATTCAACAGTGGTAGTAATAGTCCTTTCCAGGGCATGAACATGAACCCGCTGCTACAAGAGCTGAAATTGGAAGGCAATGGTAGTAGTGGTGGTAGTGTGGCAGGGTTAGTACAGGCCTCAAAAGAAGTGATGAAAGGTGAAGGACAAAATAACAGGTTGGAGTGGAATGATAATAATAATGGTGGTGTTTGCCAAAACCAGATGGAGCATATGGGTTTGTCTGATCCTTCTTCGCTTTATTGGAATAGCAACACAGCAACAGCAACAGCTTTGGGTGCTGCNTGGAGTGAACAACCCAATATTGGTCCTAATTCAGTCACACTTCTCTGATCTACAAAAATATGAAGCATCGTTTTCAAATATCTATCTAGATATCTATCTATCTCCCTTCGTTTAAGGTCCTTTTCGATCTTTAGCTCTATTAGGCTACTCTTTTCGATTTTTCCTTTTTTCTTTTTTTTTCTTTCTTTTGGGTCATAGTGGGTTGGGTTTACTTACATTGAAAAAAGAAGAAAAGAAGATACTTAAAAAGAGTAAAAATGGGAAATTAAGGTAANGGTGAGAGGAGTTTGGGATCGGAGCGATCATGTCAGCTGCAAATATATTACTCTTCAACCTGTTAGTTTTTATGTGTGCAAGGTTGAGAATTTGGTTATATTGCGCTGAGAGGAACCTCGGATCCTCTTCTCTCATCGTGTGTNTCTGTGTCACTACTCTAGTACTACTGCGGCTGAGCCACCATATCATCGACTGCAGTACAGTGTCAATTCCACTATGGAGATCAAAGGAGATCCTTTGGTGCAAGTTCTCCATNGTTGAGAGTAAGTTGGGATCTTTTTTTCATTAATTTTGTAATGTATATATGCAATGACATATCCTTTGTTTTTTTTTTTATTGCATTGTGATTAGTTAGGTGTGGTGGCCGGGGTTTTACTTGCTATTAATATGCTCGTGGAAGTAACTAATATTGGTTTCTTTTTCTGTTAACTTTCTCAACATTTGGTAGAAATGGGGATTATTGGGGTGTAATAATGGTATAGGAGAGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00117	72765	75012	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000117s00007629.1	PF02701.10	zf-Dof	57	116	2.00E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.467
SRR1783600	control	24.396
SRR1783602	moderate drought stress	26.988
SRR1811619	moderate drought stress	26.774

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.954
DRR006520	Root Summer glycyrrhizin high producing strain	17.905
DRR006521	Root Winter glycyrrhizin high producing strain	1.355
DRR006522	Root Winter glycyrrhizin high producing strain	1.335
DRR006523	Root Summer glycyrrhizin low producing strain	11.598
DRR006524	Root Summer glycyrrhizin low producing strain	11.663
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.703
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.850

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.687
SRR2868004	Drought Stress (root)	11.410
SRR2967015	Control (root)	12.014

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.200
SRR9715740	Leaf	18.601
SRR9715741	Leaf	20.919
SRR9715739	Root	17.676
SRR9715742	Root	12.588
SRR9715743	Root	16.413

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.220
SRR8749028	MeJA induced 9h	1.537
SRR8749029	MeJA induced 9h	1.411
SRR8749030	Uninduced	1.101
SRR8749031	Uninduced	0.486
SRR8749032	Uninduced	0.649

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.528
SRR8400027	Control - Root	30.087