Gene detail

Gene detail information of Glyur000117s00007623.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G28340.1	0	receptor like protein 4
NR	XP_007159352.1	0	hypothetical protein PHAVU_002G230800g [Phaseolus vulgaris]
COG	YP_004775215.1	2.00E-15	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9FN94\|RLK7_ARATH	1.00E-35	Receptor-like protein kinase At5g59670 (Precursor)
trEMBL	tr\|V7CQY9\|V7CQY9_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW31346.1}

Sequence

Transcript Sequence

>Glyur000117s00007623.1
CTCTCCCTACTCACTCCCCAGTGGCAGTGCAGGTCAAAAGTTCAACGAACCCACCTCAGTCTCACGACCATTCACCACCCTCAAACCTAAAAGTGCTTAGTACTGTTGATGAGTTGGTTAAATGGTGCTTAGTGCATACCTGCACCGTCCGATTGAAACTGCAGCGGGTATGATAAGGCTCAGCACCACGGTCACACTCCTTTACTTGGCGCTCGCGCGTAAACTTAAAACGAACAAGAAGATTGGNGTTGTAAAATTTCCAAGTGCGCTGCGAAAGTAGTGCACACAGCACACCCCACATTCTCTCTCTTCCCATTCACACACACTCTCTCTCTCTAGAAAAAGCACTCAACAAAAATGGGGACGTAATGAGTGAGAGAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAAAAGAAAAAGTAGTTGAGTCATAGAGAGAGAGAGAGAGAAGCAAGGAAGGAAAATCTACCGCAAATGCTTCTTCGATTTCTTCTGCTATGGATATTCTGCTTTACTTTTGTTTCCTCTGCAGCTCCGCAAGCGCCATTTGCTATGCGCTTAAGCTGTGGGGCTCTTCAAGATGTTCAAACAAGACCAACCGGTACCATTTGGCATAAAGATTTTGGATATACAGGAGGCATATCTGCTCATGCAACTCGTCCAAGTTACATTACCCCACCACTCAAAACTCTTCGCTATTTCCCCATGTCTGAAGGCCCTCAAAATTGTTACAACATTAGTAGAGTGCCAAAGGGTCACTACTCAGTCAGGATCTTTTTAGGACTTGTTGGGCAGTCTAGAGATGCCAGTGAACCTCTATTTGACATCTCTATTGAAGGCACTCAAATATATTCTTTGAAATCGGGTTGGACCAATCACACTGATCAAGTATTTGCTGAGGCCTTGGTGTTTCTGACAGATGACTCTGTCTCAATCTGTTTCCATAGCACAGGTCATGGAGATCCAGCGATCCTTTCTATCGAAATTCTTCAAATTGATGATAGAGCTTATTATTTTGTCCCACAGGGGAGTCAAGGGATAATACTTAGAACTGTTAAAAGACTAANTTGTGGTTTTGGACAGCCAAAATTTGACATTGATTATGGTGGGGATCCCAGGGGAGGGGACAGATTTTGGCAACACATTAGTACTTTTGGTCAGAATTCTGATCAACCTAGATCTATTGAAACGAGAATCAGACAGGCTTCACATCCACCAAACTTCTATCCGGAAGCTCTTTATCGGTCAGCGCTTGTTAGTACTAATAGTCAGCCTGATTTAACATACACATTGGAGGTGGATCCGAACAGAAATTTTTCTATTTGGTTACATTTTGCAGAGATTGATAATTCAGTGACTGCTGTGGGACAAAGGGTCTTTGATATTATGATCAATGGGGATCTTGCTTTTGAAGATGTAGACATTGTAAAATTGAGCGGGGATATTTATACTGCCCTTGTGCTCAATACAACTGTTACTGTTAATGGGAGGACTCTGACAATAACACTGAGCCCAAAGAGAGATAATCTCGCCATAATCAATGCCATTGAGATATTTGAGGTTATAACGGCCGAGTCAAAAACTTTGTCAGATGAAGTCAGGACTTTACAAATATTGAAGGCGGCATTGGGGCTTCCACCTAGGTTTGGGTGGAATGGTGATCCATGTGTTCCTCAGCAACATCCATGGAGTGGAGTGGATTGCCAATTAAACAAAAGTAGTGGCAGCTGGGTCATTGATGGACTTGCTCTTGACAATCAAGGTCTGAAGGGTTTCTTGCCAGATGACATATCCAGACTACTTAATCTACAGATCCTAAACTTGAGTGGAAACAGCATCCATGGAGCAATTCCATTCTCACTTGGTACAATAACTAACCTGCAAATGCTTGACCTGTCCTACAATGTTTTCGATGGATCAATTCCAGAAAGCCTTGGACAGTTGACATCATTACAAAGACTGAATCTCAACAGCAACGCCTTGTCTGGAAGGGTCCCAGCAACCCTAGTAGGAAGACTGCTGCACAGAGCTAGCTTCAATTTTACTGACAATGCAGGTCTGTGTGGTATACCTGGATTACCTACATGTGGACCTCATCTTTCTGCCGCAGCTAAAATTAGCATTGGGTTAGGTGCTTCTTTTGCATTTCTCCTTCTTATTAGCTGTTCAGTTTGTTGGTGGAAAAGGCGGCAGAATATCCTCCGAGCTCAGCAGATTGCAGCAAGGGCAGCTCCCTATGCAAAAGCAAGGACTCATTTTTCACGCGACATCCAGATGACAAGGCATCATAATTATGGCAACACCCACACAGCTGTTGAGAATGGGCCTATCTTGCTTTCATGATAGCATCCCATCATTCTGATACCATATNAAGTCTGCCTAGTATTCCGCTGTTTCCTGCCTTCAACTGGTTTTTATTTTTCATAGTGGAGAATGGCCATCCTAATTTGGTGGATGAACGATAGTGTAATCTGATCTGATGCTTGTCCTCCAAATACTGAGAATTCCTTGAGAGCATTGAATCACCTCTTACAAGCTGAGAATCATACTGTAATTTGTAAATCATAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00117	27564	33025	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM57

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000117s00007623.1	PF12819.2	Malectin_like	29	363	2.00E-63
Glyur000117s00007623.1	PF00560.28	LRR_1	444	463	0.12
Glyur000117s00007623.1	PF12799.2	LRR_4	467	504	6.60E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.512
SRR1783600	control	5.753
SRR1783602	moderate drought stress	3.607
SRR1811619	moderate drought stress	3.563

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.463
DRR006520	Root Summer glycyrrhizin high producing strain	7.621
DRR006521	Root Winter glycyrrhizin high producing strain	0.888
DRR006522	Root Winter glycyrrhizin high producing strain	0.880
DRR006523	Root Summer glycyrrhizin low producing strain	4.356
DRR006524	Root Summer glycyrrhizin low producing strain	4.527
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.007
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.990

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.120
SRR2868004	Drought Stress (root)	8.863
SRR2967015	Control (root)	6.762

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.414
SRR9715740	Leaf	0.680
SRR9715741	Leaf	1.015
SRR9715739	Root	1.525
SRR9715742	Root	4.560
SRR9715743	Root	3.664

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.039
SRR8749028	MeJA induced 9h	6.301
SRR8749029	MeJA induced 9h	5.259
SRR8749030	Uninduced	1.256
SRR8749031	Uninduced	0.703
SRR8749032	Uninduced	0.618

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.548
SRR8400027	Control - Root	19.093