Gene detail

Gene detail information of Glyur000117s00007621

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G28380.1	MAC/Perforin domain-containing protein
NR	KEH31010.1	MACPF domain NSL1-like protein [Medicago truncatula]
Swissprot	tr\|Q9SGN6\|NSL1_ARATH	MACPF domain-containing protein NSL1
trEMBL	tr\|A0A072UYS7\|A0A072UYS7_MEDTR	MACPF domain NSL1-like protein {ECO:0000313\|EMBL:KEH31010.1}

Sequence

Transcript Sequence

>Glyur000117s00007621.1
ACTCCANAGTCCATCCAGAGGGTACCCTTCAACCCCACACACACAAAAAAAAAATGGCCCGCGTAGATGACCCTTTGAAACGTTTCACAGCACAAGAAGAACACAACCCCTTAAAAGACTATCACCACTTGAACACTTGTACTCTTCTTCTTCTTCTTAGTATTATTCTCTGTGGAGAAACCCCTGAAGGGTGAAGTGAAACACTCATAGCTGCAAATTGTTTTGTGGCTTAAGGAGCCACAATATATTAATATATATATGAAAATGGGTATCAATATCAATGGATATAGNAATGCAGGGTTCGATTTGGATCCCCAGTTGGCAGCTGAGAAAGCTGTGAGTGTGATTGGTCAAGGCTACAACCTCTGCAGCGATATAAGGTTCTCTGCCTGCAAGTCTAGGTTGATCGATGTTGACCCTGCACACACGAGGGACCTTGTGTTTCCTGCTGGTGTTGTTGTTCCCAATGTTCCCATTTCCATCAGGTGCGACAAAGGTGAACGCACTAGGTTTCGCTCCGATGTCCTCACTTTCAATCAGATGTCTGAGCATTTCAACCAACAGCTATCTTTGTCGGGAAAGATTCCATCTGGCCAATTCAATAACATGTTCGAAATGAGAAAAAGTTGGTCCAGGGATGCAGCTTCCACTAGAAACCTTGCCTTTGATGGATGGTTCATAACATTATATACCGTCGAATTAGACAGAACCAGCATAACCCTTTCTGAAAATGTGAAAAAAGAAGTGCCTTCTTCGTGGAACCCTGCTGCTCTTGCTGAGTTCATNGAAAAATATGGTACTCATGTAATTGTTGGGGTGAAGATGGGAGGAAAGGACGTGGTTCANATCAAGCAGTCAAAAAATTCAGATTTTCAGCCAACTGAACTGCAGAAATTGCTAAAGCAATTAGCTGATGAGAGGTTTTCCCAGGATTCGAATCAAAGTTCTAATGTCAATCCTGCTGAAATATCAGGAAAACTTAAGGATGATCATGCAAAGCTTTGGGGGCAACACAAACACAAACCTATTTCCATTGTTGGCAGGCCAGTTGTAAGAAGTCACTCCAAGAATGATGATATTGTAAGCATTTCTGTTCGAAGGGGAGGTATTGATTTATGTCAACCTTATAACCAGTGGCTCTCGACCATATCACAGTCTCCTAATGTCATATCAATGTCTTTGGTGCCTATTACTTCACTACTGAATTCTGTTCCAGGAAATGGATTTTTAAATAAACCTGCAATAGAAGAGCTTCATCAGTTTCTAGAATTTCAGTTGCCTCGGCAATGGGCCCCATTGTATGGTGATCTGCCTCTTGGATTCGACCATAAGTATAAAAGGAACATGTCTCCATCACTTCAGTTCACTCTCATGGGACCCAAACTTTATGTTAATACTGTGAAGGTTGATTCTGGAAACCGGCCTGTAACAGGTATTCGCTTGTACTTGGAAGGCAAAAAGAANGACCACCTATCAATCCATCTCCAGCATCTTTCAGAGGTTCCTGGTGCCCTTGAAATTTCAGAAATTCATGGTTATGATCCTATCGACGAACCGGATGACAGAGGCTACTACGAACCCGTGAAGTGGAGCATGTTTTCTCATGTCTACACAGCACCTGTACAGTACAATAGCTCCAGAATGGATGAGTCCACAGCCATTGTGACAAAGGCCTGGTTTGAGGTTAAGCTAATGGGAATGAAGAAAGTTCTGTTCCTGAGGCTTGGATTCTCAACAGTAGCATCTGCGAAAATTCGCAGATCAGAATGGGATGGACCTTCAACCACATCTAGAAAATCAGGATTTTTCTCAGCATTGATGAGTACAANGCTTAGCAAAGAATTGCAGTCACCTGATAAACCAACTAAGGTGGACATAAACTCAGCAATTTATCATGGTGGCCCACCTGTGCCAACAAGGTCTCCCAAAATGCTGAGCTTTGTGGACACTAAGGAAATGGTCAGGGGTCCAGAGGATCCACCTGGATATTGGGTTGTCACTGGTGCAAAGCTGTGTGTGGAAGGTGGCAGAATCTCAATCAAGGCTAAATATTCCTTGTTGACTATATTGTCAGAAGAATTTCTGATGTAGTGAGAGCAAGAATTGATTAGCTGATGCTGTCTTTAGTCAGTTGTAAATATCTCGTACCATTTATTTTTAAAAAGAAACAAAGAAACAAAACAGATTTTTGGGATTGTCATCTGGCACAAAGTGACCTGAACATGGCAATTTCAGTTGATTTTTTTAGTAGGTTATAGAGTCTTTTGATTTTTACTGCCATTTAATAATGAATAGTATTTGGAATTTGGAATCATAGCATTTTACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00117	7108	11552	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000117s00007621.1	PF01823.14	MACPF	113	326	6.30E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.945
SRR1783600	control	1.014
SRR1783602	moderate drought stress	0.952
SRR1811619	moderate drought stress	0.933

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.699
DRR006520	Root Summer glycyrrhizin high producing strain	30.899
DRR006521	Root Winter glycyrrhizin high producing strain	1.776
DRR006522	Root Winter glycyrrhizin high producing strain	1.806
DRR006523	Root Summer glycyrrhizin low producing strain	46.347
DRR006524	Root Summer glycyrrhizin low producing strain	46.246
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.174
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.191

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.986
SRR2868004	Drought Stress (root)	38.660
SRR2967015	Control (root)	39.940

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	113.968
SRR9715740	Leaf	85.668
SRR9715741	Leaf	141.574
SRR9715739	Root	15.824
SRR9715742	Root	83.364
SRR9715743	Root	68.731

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	81.314
SRR8749028	MeJA induced 9h	118.693
SRR8749029	MeJA induced 9h	66.488
SRR8749030	Uninduced	155.212
SRR8749031	Uninduced	82.960
SRR8749032	Uninduced	47.257

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.995
SRR8400027	Control - Root	31.769