Gene detail information of Glyur000116s00009259


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G01100.32.00E-1960S acidic ribosomal protein family
NRXP_004494866.13.67E-39PREDICTED: 60S acidic ribosomal protein P1-3-like [Cicer arietinum]
Swissprottr|O23095|RLA12_ARATH2.00E-2860S acidic ribosomal protein P1-2
trEMBLtr|I3SWN8|I3SWN8_LOTJA2.00E-34Uncharacterized protein {ECO:0000313|EMBL:AFK44680.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00116335548336768-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006414  translational elongation


cellular_component

GO:0005622  intracellular

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000116s00009259.1PF00428.14Ribosomal_60s231095.00E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control60.949
SRR1783600control60.071
SRR1783602moderate drought stress69.911
SRR1811619moderate drought stress59.696

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain151.150
DRR006520Root Summer glycyrrhizin high producing strain150.722
DRR006521Root Winter glycyrrhizin high producing strain138.583
DRR006522Root Winter glycyrrhizin high producing strain132.405
DRR006523Root Summer glycyrrhizin low producing strain101.231
DRR006524Root Summer glycyrrhizin low producing strain99.292
DRR006525Leaf Summer glycyrrhizin high producing strain43.943
DRR006526Leaf Summer glycyrrhizin high producing strain44.182

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)230.461
SRR2868004Drought Stress (root)137.430
SRR2967015Control (root)157.384

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf170.029
SRR9715740Leaf127.492
SRR9715741Leaf105.356
SRR9715739Root209.174
SRR9715742Root128.179
SRR9715743Root138.310

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h199.475
SRR8749028MeJA induced 9h64.309
SRR8749029MeJA induced 9h135.706
SRR8749030Uninduced20.871
SRR8749031Uninduced15.701
SRR8749032Uninduced35.474

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root276.124
SRR8400027Control - Root238.453

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved