Gene detail

Gene detail information of Glyur000116s00009255

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G01080.1	2.00E-59	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	XP_004494871.1	4.41E-108	PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Cicer arietinum]
COG	YP_001424503.1	9.00E-12	RNA binding protein [Coxiella burnetii Dugway 5J108-111]
Swissprot	tr\|P19684\|ROC5_NICSY	6.00E-25	33 kDa ribonucleoprotein, chloroplastic (Precursor)
trEMBL	tr\|K7N0E4\|K7N0E4_SOYBN	3.00E-99	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G44950.2}

Sequence

Transcript Sequence

>Glyur000116s00009255.1
CACAATTTCTACCCTACGTCCTTCCTTAATTTTTTCCCCATCACAAACCCAATTATCCAAACACAACGTGACCTGGGAAGGACTTTCGGAAAACTTGTTTAGAGAATGGCAGCTAACGCTATTCTGTCTCTCTCCTTCACGGCCACGTCATCCTCTTCTTCTTCCTCCTCCTCGTTACTGAAGCATCAGCCCCTACTCGGAGGTGCTGCCAAGCGATTCCTCCGGTGTCCAGTGACTATTCCTTCCCTGCGTCTCCTCGCTGGGCGCAGCTCCAAGGCCACTGCCTTTGCGGCGGTCGCGTATGATGAAACAGCGATTGAAGAAGGAGAACAACATGTGGAGCCAGAAAACGATGGTATCGTTTCGGAGGAGCTAGAGAGGAAGAAACAAGGAAGAGCGACCGAAATTTACGTGTGCAACCTTCCAAGAAGCTTTGATACAGAACAGCTGCTTCACATGTTCAAGTCCCACGGAACCGTTCTATCTGCAGAGGTTTGCCGGAATGCAGAGACTTGTGAAAGTAAAGGGTGTGCATATGTCACTATGGGATCCATCAACTCGGCAAGAAAAGCAATTGTTGCATTGGATCGATTGGATGTTGGTGGGCGCGAAATGCGGGTTAGATTTTCAGTTCAAATGAATGCTGGGAGGAGGAGTTTTGAGACATTGAACTCGTCATCCATTATAACTTTTTACTATGAAGGCCCTCATAAGGTGTATGTTGGGAACCTTGCTAGGTCTGCTACACCTGAAGACTTGAGACATCTTTTTGGTGGATTTGGCAATGTGGCTAGTGTGAGGGTGTTGCAAGATTTGAAACAAGGGAAAAGCCGGGTCTACGCATTTGTCTCTTATCTTTCAGAGAGAGAACGTGATGCAGCAATGTCCCTCCATGGAACTGAATTTTGTGGTCGTACACTAGTAGTTAGAAAGGGGGTGGTGAAGACTGAGACCTGAATGGAAGCTTTCAGCATCTGCTTGGATAATTTTGCAATTAGCTCTGGTACAGATGACAAATGTGCATAGAGATTCCACCATGATGATCTCTGCATATTGATTCTTTTAGCAACCATTCCTGCATTGGAGCCAATGGAATGTGTGATTGTGTGAATTCTGTTTGCCCATGAGCAACTCTGGGTCAGAGTGTTGTATTCATTCTTGGACTCTCTGATTGCACTAGGGACTGGTGAGATTACTTTTAGATCAGGATGAAAGGTATGAGAGGTATTAATGTAGATAGAGGACTCAAATGTACAACTTTGAGTAGGAGACAAATGGGTTGTTTAGGTTTTACTGGGCTTTTCCTTTGTAGGAATAGCCTTAGTAGTCACAAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00116	320630	322979	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000116s00009255.1	PF00076.17	RRM_1	101	171	6.60E-14
Glyur000116s00009255.1	PF00076.17	RRM_1	204	272	2.40E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.014
SRR1783600	control	1.092
SRR1783602	moderate drought stress	1.576
SRR1811619	moderate drought stress	1.625

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.193
DRR006520	Root Summer glycyrrhizin high producing strain	2.190
DRR006521	Root Winter glycyrrhizin high producing strain	2.369
DRR006522	Root Winter glycyrrhizin high producing strain	2.280
DRR006523	Root Summer glycyrrhizin low producing strain	3.468
DRR006524	Root Summer glycyrrhizin low producing strain	3.317
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.399
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.630

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.375
SRR2868004	Drought Stress (root)	5.845
SRR2967015	Control (root)	4.610

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.529
SRR9715740	Leaf	46.599
SRR9715741	Leaf	23.759
SRR9715739	Root	1.496
SRR9715742	Root	2.546
SRR9715743	Root	1.977

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.203
SRR8749028	MeJA induced 9h	2.437
SRR8749029	MeJA induced 9h	4.393
SRR8749030	Uninduced	1.245
SRR8749031	Uninduced	3.911
SRR8749032	Uninduced	5.356

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.441
SRR8400027	Control - Root	2.411