Gene detail

Gene detail information of Glyur000116s00009253

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24470.1	1.00E-66	pseudo-response regulator 5
NR	XP_006577355.1	0	PREDICTED: two-component response regulator-like PRR95-like isoform X1 [Glycine max]
COG	YP_003951337.1	2.00E-13	Sigma-54 dependent DNA-binding response regulator FrgC [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|Q689G6\|PRR95_ORYSJ	8.00E-102	Two-component response regulator-like PRR95
trEMBL	tr\|K7KH59\|K7KH59_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G42221.1}

Sequence

Transcript Sequence

>Glyur000116s00009253.1
AGAGAGAGAAGAGATCCCATCCATCTGCCCAACTGCCATTGCTCCGTTTTCTGACTTGACAAAGATATTTGTAGGATTTTCGCGGTTGTGAGCTTGTTTCGTATTGAAGGCTGTTTGAAAATTGCAAAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTTGCCTTGCCTCCACTCAATTTTAGCGGACTTTTCAGATATTTTCACTGCTCGCTCCACTTAAGACTCAAACTCGAAGCATGAGTGCTGCGTCCTTTGAGAATGGGTGAGGTGGCCGCGACGTCTGAGATGCAGATGCTGCTGCAGCACGAGGAGGAGGTCCAAGAGCAGAGCAATGGCTCCGCCGCGGGGGTNGTGGTTAGGTGGGAGAGGTTTCTGCCTCGGATGGTGCTCAGGGTTTTGCTCGTCGAAGCCGATGATTCTACTCGCCAGATTATTGCTGCCCTTCTCCGTAAATGCGGTTACAAAGTTGCTGCAGTTTGTGACGGCCTAAAGGCGTGGGAGACNTTGAAGAACAAAGCACCTGACATAGATCTCATATTAACAGAAGTGGATTTGCCATCAGTATCTGGATTTCCACTTCTTACTTTAATCATGGAGCATGACATCTGCAAAAACATTCCTGTCATAATGATGTCTTCTCACGATTCAGTTAGCATGGTGTTCAAATGCATGTTGAAAGGTGCAGTTGATTTTCTTATCAAACCTATTCGGAGGAATGAGCTAAGGAACTTGTGGCAGCATGTGTGGAGAAGGCATGCTATACAGATTAGCAGGCCTCCTCAAAATTTAACATTTCCACAGACTAAACTTGATGTTGCTGCAGAAAACAACGCTGCAAGCAATTATTCTAGTGGTTCTGTGGCTTCCACACAGAAAAATAATGAAGGCAGNGAAAAAACTAGTGAGGCTCAAAGCACTTGTACATCGCCATTTTTGGAAGCTAAGAGTGCATACATGGAAAATATGCAGGATACGTCACAGCTGAAGAGTTCTTCAAATTTGAGCAATAATGATACAGTGAAGCACGAAAAGTCTACCGAATTTGAAAGGGAAACAGCTATGCATACCGATGAAGCTGGAGAGAAATCAATTACATTAGTATCTNAAGCTGCAAGGTGCGACAAAACTTCAACAGGTCTAAGTCTAGGTCAAGGCTATGATTATAATGAAACTGAAAACCTAGATGATGCTATAAGAAAAGAGTTAAGCAAAGCCAATCCTCATATTAATACAGCNATTCGTCGATGCGGTGATGAACTGGTAGAACCTTCTACTACTGGGACTATTGACTTGATTGCTACATTTGAGAATCTTCCAAAGAGCACCGATGAAAATCNAAGTTTCAATGGTGGTAACACATCGAAGTTTGATTTTGATACCCAATTGGAACTTTCCTTACAAAGAGATTTTCCTGGCAGCTCATGTCANCCTGCAACCGAGGAAAGGCAAATATTGAACCATTCAAATGCTTCTGCATTTTCTTTGTATAACAGCAGTAAGTTGTTGCAGCCCCTGTTTCCAACAAAGAATTTTCTTGAATCCCATAAATTATCCGAAAATACAAATACTTCTCATCAATATGGTGGCAAGAANCAAAATCAGGAAAAAATCACCACACTGGTCATTGGTCAGTCTGGACAAGTTGAAGCAAAATTGCTTAACAGTCAACTTGGATTCTTTCCTNCCACTGGGGTTACTTCTGATAATAAGTCTATGGGACATGGTGATGATTTCCATTCTATGTTCTACNCACAATCTAGTGTACATCCCACATGGACTCCAAAATCAGTGTGCCAGAAAGAGAGTTCTCCATTTCCCACGAGCATTTCTTCCCAGTCCAATCCTAAAAGTCACAACTCAGAGCATCATCACTGGTCAGATGATGCCACCTATACGTCTGATCAAAATGCAAATGATCAAAGCAATATAGATTGTGCTATGCATGACTCTCCTGCTACTGGTCAAAGTTCTGATACTAATTTTTACCGTGATGCGGCAAATCATAGTAGTAGTGGGGTATGTGGAGGCATAGGCAGCGGAAGTGATGGAAATGCNACTTCAGCTGTTGTANGCAAGAACAACCTTGAAAGTTTTATGGACAATGATCACCATAGTTATCATGTACTTAGAGGGACAGATTCTCATCGCACCAGCCAAAGAGAAGCAGCTCTAACAAAGTTTCGACTGAAGCGAAAAGACAGATGCTATGAAAAAAAGGTCCGATATGAAAGCAGGAAAAGACTAGCACAGCAGCGCCCTCGGGTGAAAGGGCAGTTTGTTCGCCAAGTACACAGTGAACATCCAGTAGCAGATGCTGGAGGTTCCTGAAATTGTTTNAATTCAAGTTACCTACACCTTCATTATTGAACTACAATCTGACTTCCAACACTAATTTGCCTCGACAAGGATTAACTGNAGGGTCTGTTGAAATATGTTTGCTTTTAGCATTGTTAGTGTTTTCTTTCGGTTTGTTANGTTAGCTGTCTCTTAGAAATTTAGGATTGTAATTATGTAGCGATTGATCNTAAGTTTTGATTTTACCTCGTGTAAAGTTTTCTTGGTCATACTACTAATATAGGGCTGTGCTAAAATTCTGATTCCGGGNGAAAGATTGATTTGCATGTTAACTGAAGGTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00116	309635	314240	-

Gene family

Gene family	subfamily
Transcription Factors Family	Pseudo ARR-B
EAR motif-containing Proteins	Pseudo ARR-B

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000160 phosphorelay signal transduction system

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000116s00009253.1	PF00072.19	Response_reg	46	157	7.60E-22
Glyur000116s00009253.1	PF06203.9	CCT	634	676	8.80E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.366
SRR1783600	control	18.324
SRR1783602	moderate drought stress	34.238
SRR1811619	moderate drought stress	34.106

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.734
DRR006520	Root Summer glycyrrhizin high producing strain	25.468
DRR006521	Root Winter glycyrrhizin high producing strain	80.272
DRR006522	Root Winter glycyrrhizin high producing strain	77.849
DRR006523	Root Summer glycyrrhizin low producing strain	40.465
DRR006524	Root Summer glycyrrhizin low producing strain	40.534
DRR006525	Leaf Summer glycyrrhizin high producing strain	62.265
DRR006526	Leaf Summer glycyrrhizin high producing strain	62.258

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.541
SRR2868004	Drought Stress (root)	26.560
SRR2967015	Control (root)	30.902

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	84.220
SRR9715740	Leaf	149.013
SRR9715741	Leaf	111.169
SRR9715739	Root	2.028
SRR9715742	Root	16.210
SRR9715743	Root	13.336

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.616
SRR8749028	MeJA induced 9h	15.456
SRR8749029	MeJA induced 9h	14.372
SRR8749030	Uninduced	17.003
SRR8749031	Uninduced	19.068
SRR8749032	Uninduced	13.864

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.309
SRR8400027	Control - Root	10.955