Gene detail

Gene detail information of Glyur000116s00009250

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46800.2	2.00E-143	zinc transporter of Arabidopsis thaliana
NR	XP_006582912.1	0	PREDICTED: uncharacterized protein LOC100790458 isoform X1 [Glycine max]
COG	YP_004982047.1	9.00E-25	cation diffusion facilitator family transporter [Geobacillus thermoleovorans CCB_US3_UF5]
Swissprot	tr\|Q9ZT63\|MTP1_ARATH	6.00E-177	Metal tolerance protein 1 short form
trEMBL	tr\|I1KHN9\|I1KHN9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G05510.1}

Sequence

Transcript Sequence

>Glyur000116s00009250.1
ATGGAAGCACANAGCTCTCATCATGCACAAATTATTGAAATTGGTGGAGATCTTCCCAATGTAAGAAGGAACATTTGTGGGGAAGGACCATGTGGATTCTCCAATGCAGAATCCATCTCTAAGGATTCAGAAGAACGATCCACTTCCATCCGGAAGCTTTTGATGGCAGTGGTTCTCTGTGTTATTTTCATGANCGTTGAAGTAGTTGGTGGTATTAAGGCTAATAGCCTTTCAATTTTGACTGATGCAGCCCATTTGCTTTCAGATGTTGCAGCATTTGCCATCTCTTTGTTTTCATTATGGGCTGCAGGGTGGGAAGCCAATCCTCGCCAGTCATATGGATTTTTCAGAATAGAGATTCTGGGTGCTTTGGTTTCTATTCAGCTAATATGGTTGCTTGCTGGGATTCTGGTATACGAAGCCATTGAAAGAATTGTTGCTGGNACTCATCAAGTTGATGGCTTTTTAATGTTCCTAGTTGCTGCATTTGGCCTAGTGGTTAACATCATTATGGCTCTGTTATTGGGTCATGATCATGGTCATGGCCATGGACATGACAATGTTCATGGCCACAGCCATGGATTTCAAGTGTCTACTCATCACCATCACCATCATNATACAAATCATCCAAATGATTGCCACCATCATAATACTCGTGAAGATCACACGAACCACCATGCACCCGAGGAGGTTGCTATACCGCTTGTTGGTGGATCAAAGGATCAGAAGAAAAGGAGATGGAACGTTAATGTACAAGGGGCTTATCTCCATGTACTTGGNGACTCTATCCAGAGTGTCGGGGTAATGATTGGGGGAGCAATCATATGGTATAATCCTGAATGGCATTTAGTTGATTTGATTTGCACATTAATCTTTTCAGTAATTGTTNTGGGGACAACTATCAATATGCTGCGAAACATATTGGAAGTCCTTATGGAGAGCACACCACGTGAGATAGATGTGGCTAAGCTTGAAAGGGGGCTGCTGGACATGGAAGAAGTGGTGGCTGTTCATGAGCTCCATATATGGGCCATTACAGTTGGGAAGTTTTTACTGTCTTGTCATGTTAAAATCAGACCAGAAGTGAATGCAGATATGGTGCTGGAAAAGGTTATAGACTATATCAGAAGGGTTCATAACATCAGTCATGTGACCATACAGATAGAGCGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00116	298639	299811	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0008324 cation transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000116s00009250.1	PF01545.16	Cation_efflux	53	389	4.00E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.031
SRR1783600	control	0.031
SRR1783602	moderate drought stress	0.227
SRR1811619	moderate drought stress	0.226

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.332
DRR006520	Root Summer glycyrrhizin high producing strain	0.440
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.094
DRR006524	Root Summer glycyrrhizin low producing strain	0.094
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.953
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.950

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.005
SRR2868004	Drought Stress (root)	5.088
SRR2967015	Control (root)	5.844

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.212
SRR9715740	Leaf	6.219
SRR9715741	Leaf	12.662
SRR9715739	Root	0.000
SRR9715742	Root	0.369
SRR9715743	Root	0.062

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.061
SRR8749028	MeJA induced 9h	0.211
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.173
SRR8749031	Uninduced	0.196
SRR8749032	Uninduced	0.024

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.399
SRR8400027	Control - Root	0.624