Gene detail information of Glyur000116s00009248 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G46820.2 | 6.00E-35 | photosystem I P subunit |
| NR | XP_004494874.1 | 1.42E-88 | PREDICTED: thylakoid membrane phosphoprotein 14 kDa, chloroplastic-like isoform X1 [Cicer arietinum] |
| COG | YP_007118737.1 | 8.00E-09 | glutamyl-tRNA synthetase [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|Q8LCA1|CUT1B_ARATH | 2.00E-57 | Protein CURVATURE THYLAKOID 1B, chloroplastic (Precursor) |
| trEMBL | tr|A0A067K802|A0A067K802_JATCU | 1.00E-87 | Uncharacterized protein {ECO:0000313|EMBL:KDP28405.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00116 | 284558 | 288250 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000116s00009248.1 | PF14159.1 | CAAD | 97 | 181 | 1.30E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.553 |
| SRR1783600 | control | 0.599 |
| SRR1783602 | moderate drought stress | 0.188 |
| SRR1811619 | moderate drought stress | 0.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.683 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.697 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.087 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.085 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.160 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.088 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 461.099 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 432.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.872 |
| SRR2868004 | Drought Stress (root) | 2.166 |
| SRR2967015 | Control (root) | 1.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 186.191 |
| SRR9715740 | Leaf | 248.299 |
| SRR9715741 | Leaf | 139.731 |
| SRR9715739 | Root | 0.232 |
| SRR9715742 | Root | 2.178 |
| SRR9715743 | Root | 1.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.998 |
| SRR8749028 | MeJA induced 9h | 1.860 |
| SRR8749029 | MeJA induced 9h | 1.778 |
| SRR8749030 | Uninduced | 5.209 |
| SRR8749031 | Uninduced | 1.841 |
| SRR8749032 | Uninduced | 2.818 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.625 |
| SRR8400027 | Control - Root | 1.188 |